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RUFY3 RUN and FYVE domain containing 3 [ Gallus gallus (chicken) ]

Gene ID: 422645, updated on 3-Dec-2024

Summary

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Symbol
RUFY3provided by CGNC
Full Name
RUN and FYVE domain containing 3provided by CGNC
Primary source
CGNC:8788
See related
Ensembl:ENSGALG00010004237
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RUFY3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
30
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (49525548..49584116)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (49529682..49588230)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532331 Neighboring gene SDA1 domain containing 1 Neighboring gene uncharacterized LOC422643 Neighboring gene joining chain of multimeric IgA and IgM Neighboring gene UTP3, small subunit processome component homolog (S. cerevisiae) Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene microRNA 1751 Neighboring gene MOB kinase activator 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RUFY3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    49525548..49584116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046940818.1 → XP_046796774.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  2. XM_046940819.1 → XP_046796775.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  3. XM_046940816.1 → XP_046796772.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  4. XM_015276412.4 → XP_015131898.1  protein RUFY3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGE9, A0A8V0XNK5
    Related
    ENSGALP00010005793.1, ENSGALT00010009910.1
    Conserved Domains (4) summary
    COG1196
    Location:298 → 537
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    cd15744
    Location:610 → 659
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  5. XM_015276413.4 → XP_015131899.1  protein RUFY3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (4) summary
    COG1196
    Location:298 → 537
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    cd15744
    Location:606 → 655
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  6. XM_015276415.4 → XP_015131901.1  protein RUFY3 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (4) summary
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    TIGR02168
    Location:283 → 500
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd15744
    Location:570 → 619
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  7. XM_040699739.2 → XP_040555673.1  protein RUFY3 isoform X10

    UniProtKB/TrEMBL
    A0A3Q3A883
    Related
    ENSGALP00010005788.1, ENSGALT00010009905.1
    Conserved Domains (3) summary
    smart00593
    Location:203 → 265
    RUN; domain involved in Ras-like GTPase signaling
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    TIGR02168
    Location:283 → 485
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_015276414.4 → XP_015131900.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Conserved Domains (3) summary
    COG1196
    Location:276 → 515
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:588 → 637
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:121 → 242
    RUN; RUN domain

  9. XM_046940817.1 → XP_046796773.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  10. XM_420599.8 → XP_420599.3  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XCD3, A0A8V0XGF3
    Related
    ENSGALP00010005792.1, ENSGALT00010009909.1
    Conserved Domains (3) summary
    COG1196
    Location:258 → 497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:570 → 619
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  11. XM_040699735.2 → XP_040555669.1  protein RUFY3 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Conserved Domains (3) summary
    smart00593
    Location:163 → 225
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:272 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:566 → 615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  12. XM_040699740.2 → XP_040555674.1  protein RUFY3 isoform X12

    UniProtKB/TrEMBL
    A0A3Q3A883, A0A8V0XGE5
    Related
    ENSGALP00010005781.1, ENSGALT00010009898.1
    Conserved Domains (2) summary
    COG1196
    Location:258 → 467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  13. XM_046940820.1 → XP_046796776.1  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XCD3, A0A8V0XGF3

  14. XM_040699734.2 → XP_040555668.1  protein RUFY3 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Related
    ENSGALP00010005791.1, ENSGALT00010009908.1
    Conserved Domains (3) summary
    smart00593
    Location:163 → 225
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:272 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:566 → 615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  15. XM_046940823.1 → XP_046796779.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  16. XM_046940825.1 → XP_046796781.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  17. XM_015276417.4 → XP_015131903.1  protein RUFY3 isoform X11

    UniProtKB/TrEMBL
    A0A3Q3A883
    Conserved Domains (2) summary
    COG1196
    Location:276 → 485
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:121 → 242
    RUN; RUN domain

  18. XM_004941179.5 → XP_004941236.1  protein RUFY3 isoform X12

    UniProtKB/TrEMBL
    A0A3Q3A883, A0A8V0XGE5
    Conserved Domains (2) summary
    COG1196
    Location:258 → 467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  19. XM_040699736.2 → XP_040555670.1  protein RUFY3 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Related
    ENSGALP00010005786.1, ENSGALT00010009903.1
    Conserved Domains (3) summary
    smart00593
    Location:115 → 177
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:224 → 532
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:522 → 571
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  20. XM_040699738.2 → XP_040555672.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (3) summary
    smart00593
    Location:99 → 161
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:208 → 516
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:506 → 555
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  21. XM_040699737.2 → XP_040555671.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (3) summary
    smart00593
    Location:99 → 161
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:208 → 516
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:506 → 555
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  22. XM_046940824.1 → XP_046796780.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  23. XM_046940826.1 → XP_046796782.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  24. XM_046940821.1 → XP_046796777.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  25. XM_015276416.3 → XP_015131902.2  protein RUFY3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q3AYU9
    Related
    ENSGALP00010005777.1, ENSGALT00010009894.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    49529682..49588230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046917061.1 → XP_046773017.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  2. XM_046917062.1 → XP_046773018.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  3. XM_046917059.1 → XP_046773015.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  4. XM_040670877.2 → XP_040526811.1  protein RUFY3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGE9, A0A8V0XNK5
    Conserved Domains (4) summary
    COG1196
    Location:298 → 537
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    cd15744
    Location:610 → 659
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  5. XM_040670878.2 → XP_040526812.1  protein RUFY3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (4) summary
    COG1196
    Location:298 → 537
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    cd15744
    Location:606 → 655
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  6. XM_040670882.2 → XP_040526816.1  protein RUFY3 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (4) summary
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    TIGR02168
    Location:283 → 500
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd15744
    Location:570 → 619
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:143 → 264
    RUN; RUN domain

  7. XM_040670889.2 → XP_040526823.1  protein RUFY3 isoform X10

    UniProtKB/TrEMBL
    A0A3Q3A883
    Conserved Domains (3) summary
    smart00593
    Location:203 → 265
    RUN; domain involved in Ras-like GTPase signaling
    PRK06995
    Location:4 → 128
    flhF; flagellar biosynthesis protein FlhF
    TIGR02168
    Location:283 → 485
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_040670879.2 → XP_040526813.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Conserved Domains (3) summary
    COG1196
    Location:276 → 515
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:588 → 637
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:121 → 242
    RUN; RUN domain

  9. XM_046917060.1 → XP_046773016.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGF3

  10. XM_040670880.2 → XP_040526814.1  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XCD3, A0A8V0XGF3
    Conserved Domains (3) summary
    COG1196
    Location:258 → 497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15744
    Location:570 → 619
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  11. XM_040670884.2 → XP_040526818.1  protein RUFY3 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Conserved Domains (3) summary
    smart00593
    Location:163 → 225
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:272 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:566 → 615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  12. XM_040670892.2 → XP_040526826.1  protein RUFY3 isoform X12

    UniProtKB/TrEMBL
    A0A3Q3A883, A0A8V0XGE5
    Conserved Domains (2) summary
    COG1196
    Location:258 → 467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  13. XM_046917063.1 → XP_046773019.1  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XCD3, A0A8V0XGF3

  14. XM_040670883.2 → XP_040526817.1  protein RUFY3 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XGF3
    Conserved Domains (3) summary
    smart00593
    Location:163 → 225
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:272 → 576
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:566 → 615
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  15. XM_046917066.1 → XP_046773022.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  16. XM_046917069.1 → XP_046773025.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  17. XM_040670890.2 → XP_040526824.1  protein RUFY3 isoform X11

    UniProtKB/TrEMBL
    A0A3Q3A883
    Conserved Domains (2) summary
    COG1196
    Location:276 → 485
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:121 → 242
    RUN; RUN domain

  18. XM_040670891.2 → XP_040526825.1  protein RUFY3 isoform X12

    UniProtKB/TrEMBL
    A0A3Q3A883, A0A8V0XGE5
    Conserved Domains (2) summary
    COG1196
    Location:258 → 467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02759
    Location:103 → 224
    RUN; RUN domain

  19. XM_040670886.2 → XP_040526820.1  protein RUFY3 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (3) summary
    smart00593
    Location:115 → 177
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:224 → 532
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:522 → 571
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  20. XM_040670888.2 → XP_040526822.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (3) summary
    smart00593
    Location:99 → 161
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:208 → 516
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:506 → 555
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  21. XM_040670887.2 → XP_040526821.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9
    Conserved Domains (3) summary
    smart00593
    Location:99 → 161
    RUN; domain involved in Ras-like GTPase signaling
    TIGR02169
    Location:208 → 516
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd15744
    Location:506 → 555
    FYVE_RUFY3; FYVE-related domain found in RUN and FYVE domain-containing protein 3 (RUFY3) and similar proteins

  22. XM_046917067.1 → XP_046773023.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  23. XM_046917070.1 → XP_046773026.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  24. XM_046917065.1 → XP_046773021.1  protein RUFY3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XGE9

  25. XM_040670885.2 → XP_040526819.2  protein RUFY3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q3AYU9
Nucleotide Protein Strain
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