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NDNF neuron-derived neurotrophic factor [ Gallus gallus (chicken) ]

Gene ID: 422672, updated on 3-Dec-2024

Summary

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Official Symbol
NDNFprovided by CGNC
Official Full Name
neuron-derived neurotrophic factorprovided by CGNC
Primary source
CGNC:9069
See related
Ensembl:ENSGALG00010005399
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C4orf31; C4H4orf31
Orthologs
human mouse all
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Genomic context

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See NDNF in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (53703030..53721099)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (53705746..53723819)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene pyroglutamylated RFamide peptide receptor Neighboring gene TNFAIP3 interacting protein 3 Neighboring gene PR/SET domain 5 Neighboring gene uncharacterized LOC112532303

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NDNF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    53703030..53721099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046940405.1 → XP_046796361.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2

  2. XM_015276372.4 → XP_015131858.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)

  3. XM_046940403.1 → XP_046796359.1  protein NDNF isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGY1, A0A8V0XTP9
    Related
    ENSGALP00010007402.1, ENSGALT00010012840.1

  4. XM_025150192.3 → XP_025005960.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Related
    ENSGALP00010007399.1, ENSGALT00010012837.1
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)

  5. XM_046940404.1 → XP_046796360.1  protein NDNF isoform X2

    UniProtKB/TrEMBL
    A0A8V0XTP9
    Related
    ENSGALP00010007398.1, ENSGALT00010012836.1

  6. XM_040699491.2 → XP_040555425.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    53705746..53723819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916686.1 → XP_046772642.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2

  2. XM_040670323.2 → XP_040526257.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)

  3. XM_046916684.1 → XP_046772640.1  protein NDNF isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGY1, A0A8V0XTP9

  4. XM_040670324.2 → XP_040526258.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)

  5. XM_046916685.1 → XP_046772641.1  protein NDNF isoform X2

    UniProtKB/TrEMBL
    A0A8V0XTP9

  6. XM_040670325.2 → XP_040526259.1  protein NDNF isoform X3

    UniProtKB/TrEMBL
    A0A8V0XTP9, F1NIF2
    Conserved Domains (1) summary
    pfam10179
    Location:291 → 383
    DUF2369; Uncharacterized conserved protein (DUF2369)
Nucleotide Protein Strain
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