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TSPAN17 tetraspanin 17 [ Gallus gallus (chicken) ]

Gene ID: 422702, updated on 3-Dec-2024

Summary

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Symbol
TSPAN17provided by CGNC
Full Name
tetraspanin 17provided by CGNC
Primary source
CGNC:9287
See related
Ensembl:ENSGALG00010004522
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TSPAN5
Orthologs
human mouse all
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Genomic context

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See TSPAN17 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (59299650..59381546, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (59300852..59382796, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053277 Neighboring gene uncharacterized LOC107053275 Neighboring gene Rap1 GTPase-GDP dissociation stimulator 1 Neighboring gene uncharacterized LOC101748470 Neighboring gene uncharacterized LOC112532320 Neighboring gene eukaryotic translation initiation factor 4E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-5
Names
tetraspanin 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    59299650..59381546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015285644.4 → XP_015141130.1  tetraspanin-5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XK23
    Related
    ENSGALP00010006133.1, ENSGALT00010010540.1
    Conserved Domains (2) summary
    cd03159
    Location:113 → 233
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:15 → 257
    Tetraspannin; Tetraspanin family

  2. XM_046940846.1 → XP_046796802.1  tetraspanin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XHE8, A0A8V0XK20
    Related
    ENSGALP00010006130.1, ENSGALT00010010531.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    59300852..59382796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040671176.2 → XP_040527110.1  tetraspanin-5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XK23
    Conserved Domains (2) summary
    cd03159
    Location:113 → 233
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:15 → 257
    Tetraspannin; Tetraspanin family

  2. XM_046917099.1 → XP_046773055.1  tetraspanin-5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XK20
Nucleotide Protein
Heading Accession and Version

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