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TAPT1 transmembrane anterior posterior transformation 1 [ Gallus gallus (chicken) ]

Gene ID: 422824, updated on 3-Dec-2024

Summary

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Symbol
TAPT1provided by CGNC
Full Name
transmembrane anterior posterior transformation 1provided by CGNC
Primary source
CGNC:10770
See related
Ensembl:ENSGALG00010011116
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TAPT1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (75974757..76013615)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (75952180..75991028)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene LIM domain binding 2 Neighboring gene uncharacterized LOC112532307 Neighboring gene uncharacterized LOC124417920 Neighboring gene uncharacterized LOC121110788 Neighboring gene prominin 1 Neighboring gene uncharacterized LOC107053291 Neighboring gene fibroblast growth factor binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling of chicken primordial germ cell ESTs. Han JY, et al. BMC Genomics, 2006 Aug 30. PMID 16939661, Free PMC Article
  2. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
  3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  5. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maintenance of protein localization in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane anterior posterior transformation protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031161.4 → NP_001026332.3  transmembrane anterior posterior transformation protein 1 homolog

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000074
    UniProtKB/Swiss-Prot
    Q5ZLG8

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    75974757..76013615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015285736.4 → XP_015141222.4  transmembrane anterior posterior transformation protein 1 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZLG8
    UniProtKB/TrEMBL
    A0A8V0Y9S2
    Related
    ENSGALP00010015158.1, ENSGALT00010026595.1

  2. XM_015285737.4 → XP_015141223.1  transmembrane anterior posterior transformation protein 1 homolog isoform X2

    Conserved Domains (1) summary
    pfam05346
    Location:39 → 343
    DUF747; Eukaryotic membrane protein family

  3. XM_015285738.4 → XP_015141224.1  transmembrane anterior posterior transformation protein 1 homolog isoform X3

    Conserved Domains (1) summary
    pfam05346
    Location:31 → 335
    DUF747; Eukaryotic membrane protein family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    75952180..75991028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916280.1 → XP_046772236.1  transmembrane anterior posterior transformation protein 1 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZLG8
    UniProtKB/TrEMBL
    A0A8V0Y9S2

  2. XM_046916281.1 → XP_046772237.1  transmembrane anterior posterior transformation protein 1 homolog isoform X2

  3. XM_046916282.1 → XP_046772238.1  transmembrane anterior posterior transformation protein 1 homolog isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZLG8.2 GenPept UniProtKB/Swiss-Prot:Q5ZLG8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials