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RNF4 ring finger protein 4 [ Gallus gallus (chicken) ]

Gene ID: 422886, updated on 3-Dec-2024

Summary

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Symbol
RNF4provided by CGNC
Full Name
ring finger protein 4provided by CGNC
Primary source
CGNC:11686
See related
Ensembl:ENSGALG00010017547
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RNF4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (82086448..82102469, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (82064728..82080750, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 193, member A Neighboring gene uncharacterized LOC121110588 Neighboring gene cilia and flagella associated protein 99 Neighboring gene zinc finger FYVE-type containing 28A Neighboring gene microRNA 6661

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SUMO-targeted ubiquitin ligase RNF4 plays a critical role in preventing chromosome loss. Hirota K, et al. Genes Cells, 2014 Oct. PMID 25205350
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF4
NP_001012907.2
XP_040554995.1
XP_046772331.1
XP_046772332.1
XP_046772333.1
XP_046772334.1
XP_046796178.1
XP_046796179.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012889.2 → NP_001012907.2  E3 ubiquitin-protein ligase RNF4

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000074
    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Related
    ENSGALP00010024908.1, ENSGALT00010042418.1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    82086448..82102469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046940223.1 → XP_046796179.1  E3 ubiquitin-protein ligase RNF4 isoform X2

    UniProtKB/TrEMBL
    Q5ZMI1

  2. XM_040699061.2 → XP_040554995.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

  3. XM_046940222.1 → XP_046796178.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Related
    ENSGALP00010024913.1, ENSGALT00010042423.1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    82064728..82080750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046916378.1 → XP_046772334.1  E3 ubiquitin-protein ligase RNF4 isoform X2

    UniProtKB/TrEMBL
    Q5ZMI1

  2. XM_046916376.1 → XP_046772332.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

  3. XM_046916377.1 → XP_046772333.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins

  4. XM_046916375.1 → XP_046772331.1  E3 ubiquitin-protein ligase RNF4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YV22, Q5ZMI1
    Conserved Domains (1) summary
    cd16533
    Location:131 → 187
    RING-HC_RNF4; RING finger, HC subclass, found in RING finger protein 4 (RNF4) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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