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RAG1 recombination activating 1 [ Gallus gallus (chicken) ]

Gene ID: 423164, updated on 3-Dec-2024

Summary

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Symbol
RAG1provided by CGNC
Full Name
recombination activating 1provided by CGNC
Primary source
CGNC:6004
See related
Ensembl:ENSGALG00010025211
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RAG-1
Orthologs
human mouse all
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Genomic context

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See RAG1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (19040483..19050348)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (19000639..19010504)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 3 Neighboring gene COMM domain containing 9 Neighboring gene proline rich 5 like Neighboring gene C11orf74 homolog Neighboring gene TNF receptor associated factor 6 Neighboring gene recombination activating gene 2 Neighboring gene uncharacterized LOC121110964 Neighboring gene leucine rich repeat containing 4C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Groth JG, et al. Mol Phylogenet Evol, 1999 Jul. PMID 10381315
  2. Selective expression of RAG-2 in chicken B cells undergoing immunoglobulin gene conversion. Carlson LM, et al. Cell, 1991 Jan 11. PMID 1986866
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-B cell allelic exclusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of endodeoxyribonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V(D)J recombination-activating protein 1
Names
recombination activating gene 1
recombination activating protein 1
NP_001026359.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031188.2 → NP_001026359.2  V(D)J recombination-activating protein 1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000214
    UniProtKB/Swiss-Prot
    P24271
    UniProtKB/TrEMBL
    A0A8V1A1U6
    Related
    ENSGALP00010037989.1, ENSGALT00010061495.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    19040483..19050348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    19000639..19010504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24271.1 GenPept UniProtKB/Swiss-Prot:P24271

Gene LinkOut

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Molecular Biology Databases
Research Materials