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NRDE2 NRDE-2, necessary for RNA interference, domain containing [ Gallus gallus (chicken) ]

Gene ID: 423404, updated on 17-Aug-2024

Summary

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Official Symbol
NRDE2provided by CGNC
Official Full Name
NRDE-2, necessary for RNA interference, domain containingprovided by CGNC
Primary source
CGNC:8113
See related
Ensembl:ENSGALG00010017628
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C14orf102; C5H14ORF102
Orthologs
human mouse all
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Genomic context

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See NRDE2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (43332279..43357124, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (43296078..43320895, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene uncharacterized LOC112532490 Neighboring gene proteasome 26S subunit, ATPase 1 Neighboring gene uncharacterized LOC121110928 Neighboring gene calmodulin 1 (phosphorylase kinase, delta)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear exosome regulator NRDE2
Names
UPF0614 protein C14orf102
protein NRDE2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    43332279..43357124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_421314.8 → XP_421314.4  nuclear exosome regulator NRDE2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z2F0
    Related
    ENSGALP00010025088.1, ENSGALT00010042598.1

  2. XM_015287744.4 → XP_015143230.2  nuclear exosome regulator NRDE2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z2F0
    Related
    ENSGALP00010025096.1, ENSGALT00010042606.1

RNA

  1. XR_003075334.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    43296078..43320895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040672987.2 → XP_040528921.1  nuclear exosome regulator NRDE2 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z2F0
    Conserved Domains (2) summary
    pfam08424
    Location:308 → 640
    NRDE-2; necessary for RNA interference
    cd22200
    Location:152 → 244
    NRDE2_MID; MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins

  2. XM_040672986.2 → XP_040528920.1  nuclear exosome regulator NRDE2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z2F0
    Conserved Domains (2) summary
    pfam08424
    Location:309 → 641
    NRDE-2; necessary for RNA interference
    cd22200
    Location:153 → 245
    NRDE2_MID; MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins

RNA

  1. XR_005850607.2 RNA Sequence

Nucleotide Protein
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