CPSF2 cleavage and polyadenylation specific factor 2 [Gallus gallus (chicken)] - Gene

Summary

Symbol: CPSF2provided by CGNC
Full Name: cleavage and polyadenylation specific factor 2provided by CGNC
Primary source: CGNC:8198
See related: Ensembl:ENSGALG00010015348
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	5	NC_052536.1 (44096118..44111006)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	5	NC_052577.1 (44065819..44080700)

Chromosome 5 - NC_052536.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cleavage and polyadenylation specificity factor subunit 2

Names: cleavage and polyadenylation specific factor 2, 100kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001031208.3 → NP_001026379.2 cleavage and polyadenylation specificity factor subunit 2

Status: PROVISIONAL

Source sequence(s)

JAENSK010000215

UniProtKB/TrEMBL

F1NMN0, Q5F3I9

Related

ENSGALP00010021487.1, ENSGALT00010036899.1

Conserved Domains (4) summary

smart01027
Location:243 → 368

Beta-Casp; Beta-Casp domain

cd16293
Location:7 → 204

CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain

pfam07521
Location:529 → 591

RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain

pfam13299
Location:608 → 779

CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

44096118..44111006

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046941789.1 → XP_046797745.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9
XM_015287453.4 → XP_015142939.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9

Conserved Domains (4) summary

smart01027
Location:243 → 368

Beta-Casp; Beta-Casp domain

cd16293
Location:7 → 204

CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain

pfam07521
Location:529 → 591

RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain

pfam13299
Location:608 → 779

CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
XM_015287452.4 → XP_015142938.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9

Conserved Domains (4) summary

smart01027
Location:243 → 368

Beta-Casp; Beta-Casp domain

cd16293
Location:7 → 204

CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain

pfam07521
Location:529 → 591

RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain

pfam13299
Location:608 → 779

CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

44065819..44080700

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046918620.1 → XP_046774576.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9
XM_046918619.1 → XP_046774575.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9
XM_046918618.1 → XP_046774574.1 cleavage and polyadenylation specificity factor subunit 2 isoform X1

UniProtKB/TrEMBL

F1NMN0, Q5F3I9