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TRMT5 tRNA methyltransferase 5 [ Gallus gallus (chicken) ]

Gene ID: 423520, updated on 3-Dec-2024

Summary

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Symbol
TRMT5provided by CGNC
Full Name
tRNA methyltransferase 5provided by CGNC
Primary source
CGNC:9026
See related
Ensembl:ENSGALG00010017850
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRMT5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (53762146..53767579)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (53750318..53755745)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene protein kinase C eta Neighboring gene solute carrier family 38 member 6 Neighboring gene MNAT1, CDK activating kinase assembly factor Neighboring gene uncharacterized LOC121111016 Neighboring gene SIX homeobox 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA N1-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(37)-N1)-methyltransferase
Names
TRM5 tRNA methyltransferase 5 homolog
tRNA methyltransferase 5 homolog
XP_004936502.2
XP_025007000.2
XP_040529723.1
XP_040529725.1
XP_040529726.1
XP_046775404.1
XP_046798409.1
XP_046798410.1
XP_421419.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    53762146..53767579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942453.1 → XP_046798409.1  tRNA (guanine(37)-N1)-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z520

  2. XM_421419.7 → XP_421419.4  tRNA (guanine(37)-N1)-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z520
    Conserved Domains (1) summary
    COG2520
    Location:188 → 483
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  3. XM_046942454.1 → XP_046798410.1  tRNA (guanine(37)-N1)-methyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z520, A0A8V0ZAW4
    Related
    ENSGALP00010025624.1, ENSGALT00010043146.1

  4. XM_004936445.5 → XP_004936502.2  tRNA (guanine(37)-N1)-methyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z3Y0, A0A8V0Z520
    Related
    ENSGALP00010025627.1, ENSGALT00010043150.1
    Conserved Domains (1) summary
    COG2520
    Location:170 → 465
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  5. XM_025151232.3 → XP_025007000.2  tRNA (guanine(37)-N1)-methyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z520
    Conserved Domains (1) summary
    COG2520
    Location:170 → 465
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    53750318..53755745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040673789.2 → XP_040529723.1  tRNA (guanine(37)-N1)-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z520
    Conserved Domains (1) summary
    COG2520
    Location:188 → 483
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  2. XM_046919448.1 → XP_046775404.1  tRNA (guanine(37)-N1)-methyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z520

  3. XM_040673791.2 → XP_040529725.1  tRNA (guanine(37)-N1)-methyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z520
    Conserved Domains (1) summary
    COG2520
    Location:170 → 465
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]

  4. XM_040673792.2 → XP_040529726.1  tRNA (guanine(37)-N1)-methyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z520
    Conserved Domains (1) summary
    COG2520
    Location:170 → 465
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
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