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JMJD1C jumonji domain containing 1C [ Gallus gallus (chicken) ]

Gene ID: 423655, updated on 3-Dec-2024

Summary

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Symbol
JMJD1Cprovided by CGNC
Full Name
jumonji domain containing 1Cprovided by CGNC
Primary source
CGNC:2125
See related
Ensembl:ENSGALG00010009410
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See JMJD1C in Genome Data Viewer
Location:
chromosome: 6
Exon count:
33
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (8484256..8648446)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (8363147..8527320)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 15-like Neighboring gene receptor accessory protein 3 Neighboring gene nuclear receptor binding factor 2 Neighboring gene uncharacterized LOC124418074 Neighboring gene uncharacterized LOC101748577 Neighboring gene rhotekin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable JmjC domain-containing histone demethylation protein 2C
NP_001186475.3
XP_015143589.2
XP_015143590.2
XP_040558292.1
XP_040558293.1
XP_040558294.1
XP_040558295.1
XP_046776029.1
XP_046776030.1
XP_046776031.1
XP_046776032.1
XP_046776033.1
XP_046776034.1
XP_046776035.1
XP_046776036.1
XP_046776037.1
XP_046776039.1
XP_046776040.1
XP_046776041.1
XP_046798776.1
XP_046798777.1
XP_046798778.1
XP_046798779.1
XP_046798780.1
XP_046798781.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199546.3 → NP_001186475.3  probable JmjC domain-containing histone demethylation protein 2C

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000227
    UniProtKB/TrEMBL
    A0A8V0Y632
    Related
    ENSGALP00010012966.1, ENSGALT00010022515.1
    Conserved Domains (2) summary
    PTZ00449
    Location:1053 → 1299
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2268 → 2340
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8484256..8648446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942820.1 → XP_046798776.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  2. XM_040702360.2 → XP_040558294.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y632, A0A8V0Y643
    Related
    ENSGALP00010013021.1, ENSGALT00010022585.1
    Conserved Domains (2) summary
    PTZ00449
    Location:847 → 1093
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2062 → 2134
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  3. XM_046942825.1 → XP_046798781.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  4. XM_040702358.2 → XP_040558292.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y3P7, A0A8V0YAH6
    Related
    ENSGALP00010012958.1, ENSGALT00010022495.1
    Conserved Domains (2) summary
    PTZ00449
    Location:954 → 1200
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2169 → 2241
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  5. XM_015288103.4 → XP_015143589.2  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6
    Conserved Domains (2) summary
    PTZ00449
    Location:877 → 1123
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2092 → 2164
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  6. XM_015288104.4 → XP_015143590.2  probable JmjC domain-containing histone demethylation protein 2C isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y3N6
    Conserved Domains (2) summary
    PTZ00449
    Location:840 → 1086
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2055 → 2127
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  7. XM_046942822.1 → XP_046798778.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  8. XM_040702359.2 → XP_040558293.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6
    Conserved Domains (2) summary
    PTZ00449
    Location:877 → 1123
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:2092 → 2164
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

  9. XM_046942823.1 → XP_046798779.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  10. XM_046942824.1 → XP_046798780.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  11. XM_046942821.1 → XP_046798777.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6
    Related
    ENSGALP00010012954.1, ENSGALT00010022489.1

  12. XM_040702361.2 → XP_040558295.1  probable JmjC domain-containing histone demethylation protein 2C isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y3N6
    Conserved Domains (2) summary
    PTZ00449
    Location:771 → 1017
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00558
    Location:1986 → 2058
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8363147..8527320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046920078.1 → XP_046776034.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  2. XM_046920077.1 → XP_046776033.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y632

  3. XM_046920073.1 → XP_046776029.1  probable JmjC domain-containing histone demethylation protein 2C isoform X6

    UniProtKB/TrEMBL
    A0A8V0XXI8

  4. XM_046920083.1 → XP_046776039.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  5. XM_046920074.1 → XP_046776030.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y3P7

  6. XM_046920079.1 → XP_046776035.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  7. XM_046920076.1 → XP_046776032.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  8. XM_046920084.1 → XP_046776040.1  probable JmjC domain-containing histone demethylation protein 2C isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  9. XM_046920075.1 → XP_046776031.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  10. XM_046920081.1 → XP_046776037.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  11. XM_046920080.1 → XP_046776036.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3N6

  12. XM_046920085.1 → XP_046776041.1  probable JmjC domain-containing histone demethylation protein 2C isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y3N6
Nucleotide Protein Strain
Heading Accession and Version

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