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COL5A2 collagen type V alpha 2 chain [ Gallus gallus (chicken) ]

Gene ID: 423986, updated on 17-Aug-2024

Summary

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Official Symbol
COL5A2provided by CGNC
Official Full Name
collagen type V alpha 2 chainprovided by CGNC
Primary source
CGNC:1798
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See COL5A2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
54
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (558140..664771)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (496403..603154)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532754 Neighboring gene WD repeat domain 75 Neighboring gene uncharacterized LOC121111311 Neighboring gene collagen type III alpha 1 chain Neighboring gene uncharacterized LOC121111310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(V) chain; LOW QUALITY PROTEIN: collagen alpha-2(V) chain
Names
alpha 2 type V collagen
collagen, type V, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    558140..664771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004942396.4 → XP_004942453.2  LOW QUALITY PROTEIN: collagen alpha-2(V) chain

    Conserved Domains (4) summary
    smart00038
    Location:1267 → 1496
    COLFI; Fibrillar collagens C-terminal domain
    smart00214
    Location:43 → 98
    VWC; von Willebrand factor (vWF) type C domain
    PRK07764
    Location:368 → 568
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:1000 → 1148
    PRK12678; transcription termination factor Rho; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    496403..603154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676438.2 → XP_040532372.1  LOW QUALITY PROTEIN: collagen alpha-2(V) chain

    Conserved Domains (4) summary
    smart00038
    Location:1267 → 1496
    COLFI; Fibrillar collagens C-terminal domain
    smart00214
    Location:43 → 98
    VWC; von Willebrand factor (vWF) type C domain
    PRK07764
    Location:368 → 568
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:1000 → 1148
    PRK12678; transcription termination factor Rho; Provisional
Nucleotide Protein Strain
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