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SF3B1 splicing factor 3b subunit 1 [ Gallus gallus (chicken) ]

Gene ID: 424056, updated on 17-Aug-2024

Summary

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Symbol
SF3B1provided by CGNC
Full Name
splicing factor 3b subunit 1provided by CGNC
Primary source
CGNC:6082
See related
Ensembl:ENSGALG00010010748
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SF3B1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (9787719..9808094, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (9713061..9733437, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418402 Neighboring gene post-GPI attachment to proteins 1 Neighboring gene ankyrin repeat domain 44 Neighboring gene microRNA 1603 Neighboring gene coenzyme Q10B Neighboring gene heat shock protein family D (Hsp60) member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1
Names
splicing factor 3b, subunit 1, 155kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9787719..9808094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_421912.8 → XP_421912.3  splicing factor 3B subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_421912.3

    UniProtKB/TrEMBL
    E1C2C3
    Related
    ENSGALP00010014477.1, ENSGALT00010025688.1
    Conserved Domains (4) summary
    smart01104
    Location:233 → 379
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:443 → 1301
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:847 → 871
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:329 → 439
    SF3b1; Splicing factor 3B subunit 1

  2. XM_015289491.4 → XP_015144977.1  splicing factor 3B subunit 1 isoform X2

    Conserved Domains (4) summary
    smart01104
    Location:88 → 234
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:298 → 1156
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:702 → 726
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:184 → 294
    SF3b1; Splicing factor 3B subunit 1

  3. XM_040703597.2 → XP_040559531.1  splicing factor 3B subunit 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y683
    Related
    ENSGALP00010014463.1, ENSGALT00010025661.1

RNA

  1. XR_001467449.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9713061..9733437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676064.2 → XP_040531998.1  splicing factor 3B subunit 1 isoform X1

    UniProtKB/TrEMBL
    E1C2C3
    Conserved Domains (4) summary
    smart01104
    Location:233 → 379
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:443 → 1301
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:847 → 871
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:329 → 439
    SF3b1; Splicing factor 3B subunit 1

  2. XM_040676065.2 → XP_040531999.1  splicing factor 3B subunit 1 isoform X2

    Conserved Domains (4) summary
    smart01104
    Location:88 → 234
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:298 → 1156
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:702 → 726
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:184 → 294
    SF3b1; Splicing factor 3B subunit 1

  3. XM_040676066.2 → XP_040532000.1  splicing factor 3B subunit 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y683

RNA

  1. XR_005851670.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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