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CARF calcium responsive transcription factor [ Gallus gallus (chicken) ]

Gene ID: 424090, updated on 3-Dec-2024

Summary

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Symbol
CARFprovided by CGNC
Full Name
calcium responsive transcription factorprovided by CGNC
Primary source
CGNC:6426
See related
Ensembl:ENSGALG00010025262
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ALS2CR8
Orthologs
human mouse all
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Genomic context

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See CARF in Genome Data Viewer
Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (11598924..11635638)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (11519647..11553043)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 117 member B Neighboring gene WD repeat domain 12 Neighboring gene pleckstrin homology domain containing M3 Neighboring gene uncharacterized LOC121111271 Neighboring gene frizzled class receptor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-responsive transcription factor
Names
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11598924..11635638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025152600.3 → XP_025008368.2  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247

  2. XM_015289503.4 → XP_015144989.2  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247
    Related
    ENSGALP00010038079.1, ENSGALT00010061664.1

  3. XM_025152601.3 → XP_025008369.1  calcium-responsive transcription factor isoform X3

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  4. XM_025152602.3 → XP_025008370.1  calcium-responsive transcription factor isoform X4

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  5. XM_015289502.4 → XP_015144988.1  calcium-responsive transcription factor isoform X2

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  6. XM_025152603.2 → XP_025008371.2  calcium-responsive transcription factor isoform X5

RNA

  1. XR_005861487.2 RNA Sequence

  2. XR_006939868.1 RNA Sequence

  3. XR_006939869.1 RNA Sequence

  4. XR_006939870.1 RNA Sequence

  5. XR_006939867.1 RNA Sequence

  6. XR_212605.5 RNA Sequence

  7. XR_005861489.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11519647..11553043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676163.2 → XP_040532097.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247
    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  2. XM_040676168.2 → XP_040532102.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247
    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  3. XM_046922028.1 → XP_046777984.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247

  4. XM_046922027.1 → XP_046777983.1  calcium-responsive transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A8V1A247

  5. XM_040676164.2 → XP_040532098.1  calcium-responsive transcription factor isoform X6

  6. XM_040676165.2 → XP_040532099.1  calcium-responsive transcription factor isoform X7

  7. XM_040676167.2 → XP_040532101.1  calcium-responsive transcription factor isoform X3

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  8. XM_040676169.2 → XP_040532103.1  calcium-responsive transcription factor isoform X4

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  9. XM_040676166.2 → XP_040532100.1  calcium-responsive transcription factor isoform X2

    Conserved Domains (1) summary
    pfam15299
    Location:219 → 446
    ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

  10. XM_040676170.1 → XP_040532104.1  calcium-responsive transcription factor isoform X5

Nucleotide Protein
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