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LOC424199 uncharacterized LOC424199 [ Gallus gallus (chicken) ]

Gene ID: 424199, updated on 17-Aug-2024

Summary

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Symbol
LOC424199provided by CGNC
Full Name
uncharacterized LOC424199provided by CGNC
Primary source
CGNC:66466
See related
Ensembl:ENSGALG00010018145
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

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See LOC424199 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (21705885..21707791, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (21625170..21627076, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene obscurin like 1 Neighboring gene transmembrane protein 198 Neighboring gene chondroitin polymerizing factor Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene rac GTPase-activating protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC424199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    21705885..21707791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015290116.4 → XP_015145602.2  uncharacterized protein LOC424199 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z579
    Conserved Domains (1) summary
    cl03449
    Location:109 → 200
    M35_like; Peptidase M35 family

  2. XM_422045.7 → XP_422045.5  uncharacterized protein LOC424199 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z579
    Related
    ENSGALP00010026077.1, ENSGALT00010043845.1
    Conserved Domains (1) summary
    cl03449
    Location:127 → 218
    M35_like; Peptidase M35 family

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    21625170..21627076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675541.2 → XP_040531475.1  uncharacterized protein LOC424199 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z579
    Conserved Domains (1) summary
    cl03449
    Location:109 → 200
    M35_like; Peptidase M35 family

  2. XM_040675540.2 → XP_040531474.1  uncharacterized protein LOC424199 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z579
    Conserved Domains (1) summary
    cl03449
    Location:127 → 218
    M35_like; Peptidase M35 family
Nucleotide Protein Strain
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