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Syp Syncrip [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42460, updated on 9-Dec-2024

Summary

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Official Symbol
Sypprovided by FlyBase
Official Full Name
Syncripprovided by FlyBase
Primary source
FLYBASE:FBgn0038826
Locus tag
Dmel_CG17838
See related
AllianceGenome:FB:FBgn0038826
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
AI945337; anon-WO0118547.613; cg17838; CG17838; Dmel\CG17838; l(3)03806; syp
Summary
Enables lncRNA binding activity; mRNA 3'-UTR binding activity; and mRNA 5'-UTR binding activity. Involved in several processes, including dorsal appendage formation; negative regulation of synaptic assembly at neuromuscular junction; and post-transcriptional regulation of gene expression. Located in several cellular components, including basal cortex; postsynapse of neuromuscular junction; and ribonucleoprotein granule. Part of precatalytic spliceosome. Is expressed in several structures, including adult head; adult heart; esophagus primordium; foregut primordium; and gonad. Orthologous to human HNRNPR (heterogeneous nuclear ribonucleoprotein R) and SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See Syp in Genome Data Viewer
Location:
92F12-93A1; 3-69 cM
Exon count:
19
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20756729..20810726)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16582451..16636448)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Proteasome alpha4 subunit, Testis-specific 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Tak1-like 1 Neighboring gene Fancd2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-binding protein syncrip regulates starvation-induced hyperactivity in adult Drosophila. Chi W, et al. PLoS Genet, 2021 Feb. PMID 33617535, Free PMC Article
  2. Imp is expressed in INPs and newborn neurons where it regulates neuropil targeting in the central complex. Munroe JA, et al. Neural Dev, 2023 Nov 29. PMID 38031099, Free PMC Article
  3. A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets. Hobor F, et al. Nat Commun, 2018 Feb 26. PMID 29483512, Free PMC Article
  4. Imp is required for timely exit from quiescence in Drosophila type II neuroblasts. Munroe JA, et al. PLoS One, 2022. PMID 36520944, Free PMC Article
  5. Mamo decodes hierarchical temporal gradients into terminal neuronal fate. Liu LY, et al. Elife, 2019 Sep 23. PMID 31545163, Free PMC Article

See all (115) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RNA-binding protein syncrip regulates starvation-induced hyperactivity in adult Drosophila.
    Title: RNA-binding protein syncrip regulates starvation-induced hyperactivity in adult Drosophila.
  2. Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation.
    Title: Syncrip/hnRNP Q is required for activity-induced Msp300/Nesprin-1 expression and new synapse formation.
  3. A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets.
    Title: A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets.
  4. the levels of Imp and Syp RNA-binding proteins regulate neuroblasts decommissioning.
    Title: Imp and Syp RNA-binding proteins govern decommissioning of Drosophila neural stem cells.
  5. the opposing Imp/Syp gradients encode stem cell age, specifying multiple cell fates within a lineage.
    Title: Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables lncRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 5'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in dorsal appendage formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IC
Inferred by Curator
more info
 PubMed 
involved_in mRNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of synaptic assembly at neuromuscular junction IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in oocyte dorsal/ventral axis specification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of neuromuscular synaptic transmission IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of oskar mRNA translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in basal cortex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in postsynapse of neuromuscular junction IDA
Inferred from Direct Assay
more info
 PubMed 
part_of precatalytic spliceosome HDA PubMed 
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ribonucleoprotein granule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
syncrip
Names
CG17838-PA
CG17838-PB
CG17838-PC
CG17838-PD
CG17838-PE
CG17838-PF
CG17838-PH
CG17838-PI
CG17838-PJ
CG17838-PK
CG17838-PL
CG17838-PM
CG17838-PN
CG17838-PO
CG17838-PP
CG17838-PQ
CG17838-PR
CG17838-PS
CG17838-PT
CG17838-PV
Syp-PA
Syp-PB
Syp-PC
Syp-PD
Syp-PE
Syp-PF
Syp-PH
Syp-PI
Syp-PJ
Syp-PK
Syp-PL
Syp-PM
Syp-PN
Syp-PO
Syp-PP
Syp-PQ
Syp-PR
Syp-PS
Syp-PT
Syp-PV

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    20756729..20810726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001275849.1 → NP_001262778.1  syncrip, isoform K [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262778.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHH8, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:197 → 275
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:278 → 359
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:373 → 444
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  2. NM_169927.3 → NP_732557.2  syncrip, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732557.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IN47
    Related
    FBpp0083365
    Conserved Domains (3) summary
    cd12249
    Location:197 → 275
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:278 → 359
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:373 → 444
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  3. NM_001104379.2 → NP_001097849.1  syncrip, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097849.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JR54
    Conserved Domains (3) summary
    cd12249
    Location:168 → 246
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:249 → 330
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:344 → 415
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  4. NM_001369986.1 → NP_001356920.1  syncrip, isoform S [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4D6K4U6, Q86NT3
    Conserved Domains (1) summary
    TIGR01648
    Location:145 → 547
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  5. NM_001369987.1 → NP_001356921.1  syncrip, isoform T [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4D6K1Z7
    Conserved Domains (1) summary
    TIGR01648
    Location:145 → 547
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  6. NM_001275847.1 → NP_001262776.1  syncrip, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262776.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KH21
    Conserved Domains (3) summary
    cd12249
    Location:197 → 275
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:278 → 359
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:373 → 444
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  7. NM_001275850.1 → NP_001262779.1  syncrip, isoform M [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262779.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KGK5, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:197 → 275
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:278 → 359
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:373 → 444
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  8. NM_142656.4 → NP_650913.2  syncrip, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650913.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JR56, Q7KSA0, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  9. NM_001275851.1 → NP_001262780.1  syncrip, isoform N [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262780.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KGF9, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  10. NM_001275855.1 → NP_001262784.1  syncrip, isoform R [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262784.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KGK8
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  11. NM_169928.3 → NP_732558.2  syncrip, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732558.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KSA1, Q95TW4
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  12. NM_169929.3 → NP_732559.1  syncrip, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732559.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A4V364
    Related
    FBpp0083368
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  13. NM_001104378.2 → NP_001097848.2  syncrip, isoform L [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097848.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JR56, Q7KSA0, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  14. NM_001275853.1 → NP_001262782.1  syncrip, isoform P [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262782.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KGF9, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:163 → 241
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:244 → 325
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:339 → 410
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  15. NM_169925.3 → NP_732555.1  syncrip, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732555.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C6SV30, Q8IN48
    Related
    FBpp0083370
    Conserved Domains (2) summary
    TIGR01648
    Location:153 → 508
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21065
    Location:68 → 150
    NURR_Syncrip-like; NURR (N-terminal unit for RNA recognition) domain found in Drosophila melanogaster Syncrip and similar proteins

  16. NM_001275854.1 → NP_001262783.1  syncrip, isoform Q [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262783.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHI4, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:205 → 283
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:286 → 367
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:381 → 452
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  17. NM_001275848.1 → NP_001262777.1  syncrip, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262777.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHT5, Q86NT3
    Conserved Domains (3) summary
    cd12249
    Location:205 → 283
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:286 → 367
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:381 → 452
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  18. NM_169926.2 → NP_732556.1  syncrip, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732556.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86NT3, Q9VDI8
    Related
    FBpp0083369
    Conserved Domains (3) summary
    cd12249
    Location:205 → 283
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:286 → 367
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:381 → 452
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

  19. NM_001369988.1 → NP_001356922.1  syncrip, isoform V [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A4D6K3P4
    Conserved Domains (1) summary
    TIGR01648
    Location:153 → 555
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  20. NM_001275852.1 → NP_001262781.1  syncrip, isoform O [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262781.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KH24
    Conserved Domains (3) summary
    cd12249
    Location:205 → 283
    RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12250
    Location:286 → 367
    RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    cd12251
    Location:381 → 452
    RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KGF9 A0A0B4KGF9
A0A0B4KGK5 A0A0B4KGK5
A0A0B4KGK8 A0A0B4KGK8
A0A0B4KH21 A0A0B4KH21
A0A0B4KH24 A0A0B4KH24
A0A0B4KHH8 A0A0B4KHH8
A0A0B4KHI4 A0A0B4KHI4
A0A0B4KHT5 A0A0B4KHT5
A0A4D6K1Z7 A0A4D6K1Z7
A0A4D6K3P4 A0A4D6K3P4
A0A4D6K4U6 A0A4D6K4U6
A4V364 A4V364
A8JR54 A8JR54
Q5U0U3 Q5U0U3
Q7KSA0 Q7KSA0
Q86NT3 Q86NT3
Q8IN47 Q8IN47
Q8IN48 Q8IN48
Q95TW4 Q95TW4
Q9VDI8 Q9VDI8

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