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FAF1 Fas associated factor 1 [ Gallus gallus (chicken) ]

Gene ID: 424629, updated on 3-Dec-2024

Summary

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Symbol
FAF1provided by CGNC
Full Name
Fas associated factor 1provided by CGNC
Primary source
CGNC:8001
See related
Ensembl:ENSGALG00010024514
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See FAF1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (23488320..23633429, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (23500055..23645170, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054042 Neighboring gene uncharacterized LOC121111416 Neighboring gene DMRT like family A2 Neighboring gene uncharacterized LOC112532915 Neighboring gene translation initiation factor IF-2 Neighboring gene cyclin dependent kinase inhibitor 2C Neighboring gene ring finger protein 11 Neighboring gene uncharacterized LOC107054039 Neighboring gene tetratricopeptide repeat domain 39A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NF-kappaB binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FAS-associated factor 1
Names
Fas (TNFRSF6) associated factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    23488320..23633429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040704871.2 → XP_040560805.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0
    Conserved Domains (5) summary
    cd02990
    Location:252 → 387
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd01771
    Location:470 → 549
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:1 → 73
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:93 → 168
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:390 → 498
    Mitofilin; Mitochondrial inner membrane protein

  2. XM_040704872.2 → XP_040560806.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0
    Conserved Domains (5) summary
    cd02990
    Location:252 → 387
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd01771
    Location:470 → 549
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:1 → 73
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:93 → 168
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:390 → 498
    Mitofilin; Mitochondrial inner membrane protein

  3. XM_015291225.4 → XP_015146711.1  FAS-associated factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5NY89, A0A8V0ZSU0
    Related
    ENSGALP00010036573.1, ENSGALT00010059813.1
    Conserved Domains (6) summary
    cd02990
    Location:352 → 487
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd14413
    Location:14 → 46
    UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
    cd01771
    Location:570 → 649
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:101 → 173
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:193 → 268
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:490 → 598
    Mitofilin; Mitochondrial inner membrane protein

  4. XM_025153119.3 → XP_025008887.1  FAS-associated factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZSU0, A0A8V1A243
    Related
    ENSGALP00010036566.1, ENSGALT00010059806.1
    Conserved Domains (6) summary
    cd02990
    Location:339 → 474
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd14413
    Location:1 → 33
    UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
    cd01771
    Location:557 → 636
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:88 → 160
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:180 → 255
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:477 → 585
    Mitofilin; Mitochondrial inner membrane protein

  5. XM_046944878.1 → XP_046800834.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    23500055..23645170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678059.2 → XP_040533993.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0
    Conserved Domains (5) summary
    cd02990
    Location:252 → 387
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd01771
    Location:470 → 549
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:1 → 73
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:93 → 168
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:390 → 498
    Mitofilin; Mitochondrial inner membrane protein

  2. XM_040678060.2 → XP_040533994.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0
    Conserved Domains (5) summary
    cd02990
    Location:252 → 387
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd01771
    Location:470 → 549
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:1 → 73
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:93 → 168
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:390 → 498
    Mitofilin; Mitochondrial inner membrane protein

  3. XM_040678057.2 → XP_040533991.1  FAS-associated factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5NY89, A0A8V0ZSU0
    Conserved Domains (6) summary
    cd02990
    Location:352 → 487
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd14413
    Location:14 → 46
    UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
    cd01771
    Location:570 → 649
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:101 → 173
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:193 → 268
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:490 → 598
    Mitofilin; Mitochondrial inner membrane protein

  4. XM_040678058.2 → XP_040533992.1  FAS-associated factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZSU0, A0A8V1A243
    Conserved Domains (6) summary
    cd02990
    Location:339 → 474
    UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
    cd14413
    Location:1 → 33
    UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
    cd01771
    Location:557 → 636
    UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
    cd17129
    Location:88 → 160
    Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
    cd17130
    Location:180 → 255
    Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
    pfam09731
    Location:477 → 585
    Mitofilin; Mitochondrial inner membrane protein

  5. XM_046923131.1 → XP_046779087.1  FAS-associated factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZSU0
Nucleotide Protein Strain
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