U2SURP U2 snRNP associated SURP domain containing [Gallus gallus (chicken)] - Gene

Summary

Symbol: U2SURPprovided by CGNC
Full Name: U2 snRNP associated SURP domain containingprovided by CGNC
Primary source: CGNC:52256
See related: Ensembl:ENSGALG00010015839
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 27

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	9	NC_052540.1 (10283851..10326479)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	9	NC_052581.1 (10085148..10127768)

Chromosome 9 - NC_052540.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in RNA processing	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: U2 snRNP-associated SURP motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

10283851..10326479

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_422593.8 → XP_422593.5 U2 snRNP-associated SURP motif-containing protein isoform X1

UniProtKB/TrEMBL

A0A8V0YTU7

Related

ENSGALP00010022019.1, ENSGALT00010038153.1

Conserved Domains (5) summary

smart00582
Location:498 → 633

RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

COG0724
Location:113 → 309

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

pfam01805
Location:386 → 437

Surp; Surp module

cd12223
Location:230 → 313

RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins

cd21370
Location:794 → 842

cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
XM_004937071.5 → XP_004937128.2 U2 snRNP-associated SURP motif-containing protein isoform X2

UniProtKB/TrEMBL

A0A8V0YTU7

Related

ENSGALP00010022026.1, ENSGALT00010038162.1

Conserved Domains (5) summary

smart00582
Location:497 → 632

RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

COG0724
Location:113 → 308

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

pfam01805
Location:385 → 436

Surp; Surp module

cd12223
Location:229 → 312

RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins

cd21370
Location:793 → 841

cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
XM_046898659.1 → XP_046754615.1 U2 snRNP-associated SURP motif-containing protein isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

10085148..10127768

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040679379.2 → XP_040535313.1 U2 snRNP-associated SURP motif-containing protein isoform X1

UniProtKB/TrEMBL

A0A8V0YTU7

Conserved Domains (5) summary

smart00582
Location:498 → 633

RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

COG0724
Location:113 → 309

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

pfam01805
Location:386 → 437

Surp; Surp module

cd12223
Location:230 → 313

RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins

cd21370
Location:794 → 842

cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
XM_040679380.2 → XP_040535314.1 U2 snRNP-associated SURP motif-containing protein isoform X2

UniProtKB/TrEMBL

A0A8V0YTU7

Conserved Domains (5) summary

smart00582
Location:497 → 632

RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

COG0724
Location:113 → 308

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

pfam01805
Location:385 → 436

Surp; Surp module

cd12223
Location:229 → 312

RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins

cd21370
Location:793 → 841

cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
XM_046924175.1 → XP_046780131.1 U2 snRNP-associated SURP motif-containing protein isoform X3