TRPC1 transient receptor potential cation channel subfamily C member 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: TRPC1provided by CGNC
Full Name: transient receptor potential cation channel subfamily C member 1provided by CGNC
Primary source: CGNC:1899
See related: Ensembl:ENSGALG00010015788
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	9	NC_052540.1 (10199920..10222227)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	9	NC_052581.1 (10001230..10023559)

Chromosome 9 - NC_052540.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables inositol 1,4,5 trisphosphate binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables store-operated calcium channel activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in calcium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in manganese ion transport	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cytosolic calcium ion concentration	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of cation channel complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: short transient receptor potential channel 1

Names: store-operated calcium channel

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001004409.3 → NP_001004409.1 short transient receptor potential channel 1

See identical proteins and their annotated locations for NP_001004409.1

Status: VALIDATED

Source sequence(s)

JAENSK010000240

UniProtKB/TrEMBL

F1NH57, Q6DMS2

Related

ENSGALP00010021927.1, ENSGALT00010038005.1

Conserved Domains (4) summary

cd00204
Location:39 → 167

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

TIGR00870
Location:36 → 762

trp; transient-receptor-potential calcium channel protein

pfam08344
Location:181 → 239

TRP_2; Transient receptor ion channel II

sd00045
Location:71 → 98

ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

10199920..10222227

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040705527.2 → XP_040561461.1 short transient receptor potential channel 1 isoform X1

Conserved Domains (2) summary

TIGR00870
Location:36 → 761

trp; transient-receptor-potential calcium channel protein

sd00045
Location:71 → 98

ANK; ANK repeat [structural motif]
XM_040705528.2 → XP_040561462.1 short transient receptor potential channel 1 isoform X2

Conserved Domains (1) summary

TIGR00870
Location:4 → 719

trp; transient-receptor-potential calcium channel protein
XM_046898373.1 → XP_046754329.1 short transient receptor potential channel 1 isoform X3

RNA

XR_001463738.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

10001230..10023559

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046923765.1 → XP_046779721.1 short transient receptor potential channel 1 isoform X1
XM_046923766.1 → XP_046779722.1 short transient receptor potential channel 1 isoform X2
XM_046923767.1 → XP_046779723.1 short transient receptor potential channel 1 isoform X3