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RPGRIP1L RPGRIP1 like [ Gallus gallus (chicken) ]

Gene ID: 425392, updated on 17-Aug-2024

Summary

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Symbol
RPGRIP1Lprovided by CGNC
Full Name
RPGRIP1 likeprovided by CGNC
Primary source
CGNC:2631
See related
Ensembl:ENSGALG00010021298
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RPGRIP1L in Genome Data Viewer
Location:
chromosome: 11
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (4518047..4581179)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (4860540..4924140)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111682 Neighboring gene uncharacterized LOC107054274 Neighboring gene FTO, alpha-ketoglutarate dependent dioxygenase Neighboring gene uncharacterized LOC121106559 Neighboring gene AKT interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thromboxane A2 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal rod cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor connecting cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein fantom

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4518047..4581179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001234247.7 → XP_001234248.4  protein fantom isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHK9, A0A8V0ZPY4
    Related
    ENSGALP00010030793.1, ENSGALT00010051631.1
    Conserved Domains (3) summary
    cd00030
    Location:787 → 882
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_040707176.2 → XP_040563110.1  protein fantom isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:787 → 882
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_025154313.3 → XP_025010081.2  protein fantom isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:786 → 881
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_040707177.2 → XP_040563111.1  protein fantom isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:786 → 881
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_004944174.5 → XP_004944231.3  protein fantom isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZBY0, A0A8V0ZHK9
    Related
    ENSGALP00010030787.1, ENSGALT00010051620.1
    Conserved Domains (2) summary
    cd00030
    Location:739 → 834
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_040707178.2 → XP_040563112.1  protein fantom isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (2) summary
    cd00030
    Location:738 → 833
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_040707179.2 → XP_040563113.1  protein fantom isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (2) summary
    cd00030
    Location:738 → 833
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4860540..4924140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681097.2 → XP_040537031.1  protein fantom isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:787 → 882
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_040681099.2 → XP_040537033.1  protein fantom isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:787 → 882
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. XM_040681098.2 → XP_040537032.1  protein fantom isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:786 → 881
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_040681100.2 → XP_040537034.1  protein fantom isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (3) summary
    cd00030
    Location:786 → 881
    C2; C2 domain
    PRK00252
    Location:64 → 135
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:198 → 497
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_040681101.2 → XP_040537035.1  protein fantom isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (2) summary
    cd00030
    Location:739 → 834
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_040681102.2 → XP_040537036.1  protein fantom isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (2) summary
    cd00030
    Location:738 → 833
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_040681103.2 → XP_040537037.1  protein fantom isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZHK9
    Conserved Domains (2) summary
    cd00030
    Location:738 → 833
    C2; C2 domain
    COG1196
    Location:198 → 495
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version

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