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HP1BP3 heterochromatin protein 1 binding protein 3 [ Gallus gallus (chicken) ]

Gene ID: 425543, updated on 3-Dec-2024

Summary

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Symbol
HP1BP3provided by CGNC
Full Name
heterochromatin protein 1 binding protein 3provided by CGNC
Primary source
CGNC:7661
See related
Ensembl:ENSGALG00010017018
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HP1BP3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (6711999..6732008)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (6746824..6766839)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112530142 Neighboring gene endothelin converting enzyme 1 Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene uncharacterized LOC121107401 Neighboring gene uncharacterized LOC121107400 Neighboring gene SH2 domain containing 5 Neighboring gene kinesin family member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006560.2 → NP_001006560.2  heterochromatin protein 1-binding protein 3

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000329
    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6
    Related
    ENSGALP00010024055.1, ENSGALT00010041110.1
    Conserved Domains (4) summary
    smart00526
    Location:343 → 403
    H15; Domain in histone families 1 and 5
    PHA03378
    Location:460 → 553
    PHA03378; EBNA-3B; Provisional
    PRK13108
    Location:21 → 138
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd00073
    Location:156 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6711999..6732008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040651200.2 → XP_040507134.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6
    Conserved Domains (4) summary
    smart00526
    Location:343 → 403
    H15; Domain in histone families 1 and 5
    PHA03378
    Location:460 → 553
    PHA03378; EBNA-3B; Provisional
    PRK13108
    Location:21 → 138
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd00073
    Location:156 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

  2. XM_040651199.2 → XP_040507133.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6
    Conserved Domains (4) summary
    smart00526
    Location:343 → 403
    H15; Domain in histone families 1 and 5
    PHA03378
    Location:460 → 553
    PHA03378; EBNA-3B; Provisional
    PRK13108
    Location:21 → 138
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd00073
    Location:156 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

  3. XM_015297255.4 → XP_015152741.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q5ZM33
    Conserved Domains (2) summary
    cd00073
    Location:118 → 205
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:305 → 374
    Linker_histone; linker histone H1 and H5 family

  4. XM_046903174.1 → XP_046759130.1  heterochromatin protein 1-binding protein 3 isoform X3

  5. XM_040651202.2 → XP_040507136.1  heterochromatin protein 1-binding protein 3 isoform X4

    Conserved Domains (3) summary
    smart00526
    Location:259 → 320
    H15; Domain in histone families 1 and 5
    PRK13108
    Location:21 → 138
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd00073
    Location:156 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

  6. XM_040651198.2 → XP_040507132.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6
    Related
    ENSGALP00010024051.1, ENSGALT00010041105.1
    Conserved Domains (4) summary
    smart00526
    Location:343 → 403
    H15; Domain in histone families 1 and 5
    PHA03378
    Location:460 → 553
    PHA03378; EBNA-3B; Provisional
    PRK13108
    Location:21 → 138
    PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
    cd00073
    Location:156 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6746824..6766839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046931353.1 → XP_046787309.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6

  2. XM_046931354.1 → XP_046787310.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6

  3. XM_046931355.1 → XP_046787311.1  heterochromatin protein 1-binding protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q5ZM33

  4. XM_046931356.1 → XP_046787312.1  heterochromatin protein 1-binding protein 3 isoform X3

  5. XM_046931357.1 → XP_046787313.1  heterochromatin protein 1-binding protein 3 isoform X4

  6. XM_046931352.1 → XP_046787308.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5ZM33
    UniProtKB/TrEMBL
    F1N8H6
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZM33.1 GenPept UniProtKB/Swiss-Prot:Q5ZM33

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