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OTUD7B OTU deubiquitinase 7B [ Gallus gallus (chicken) ]

Gene ID: 426041, updated on 3-Dec-2024

Summary

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Symbol
OTUD7Bprovided by CGNC
Full Name
OTU deubiquitinase 7Bprovided by CGNC
Primary source
CGNC:10051
See related
Ensembl:ENSGALG00010028750
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See OTUD7B in Genome Data Viewer
Location:
chromosome: 25
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (631390..664793)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (128776..162255, complement)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene sperm-associated antigen 4 protein-like Neighboring gene sperm-associated antigen 4 protein-like Neighboring gene myotubularin related protein 11 Neighboring gene splicing factor 3b subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K11-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OTU domain-containing protein 7B
Names
OTU domain containing 7B
XP_040508413.1
XP_040508414.1
XP_040508415.1
XP_040546581.1
XP_040546583.1
XP_046759908.1
XP_046759909.1
XP_046759910.1
XP_046788650.1
XP_046788651.1
XP_046788652.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    631390..664793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046903954.1 → XP_046759910.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

  2. XM_040652480.2 → XP_040508414.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3
    Conserved Domains (2) summary
    smart00259
    Location:818 → 841
    ZnF_A20; A20-like zinc fingers
    cd14347
    Location:1 → 42
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

  3. XM_046903952.1 → XP_046759908.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

  4. XM_040652479.2 → XP_040508413.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3
    Related
    ENSGALP00010042832.1, ENSGALT00010069571.1
    Conserved Domains (2) summary
    smart00259
    Location:818 → 841
    ZnF_A20; A20-like zinc fingers
    cd14347
    Location:1 → 42
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

  5. XM_040652481.2 → XP_040508415.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3
    Conserved Domains (2) summary
    smart00259
    Location:818 → 841
    ZnF_A20; A20-like zinc fingers
    cd14347
    Location:1 → 42
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

  6. XM_046903953.1 → XP_046759909.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    128776..162255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040690647.2 → XP_040546581.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3
    Conserved Domains (2) summary
    smart00259
    Location:818 → 841
    ZnF_A20; A20-like zinc fingers
    cd14347
    Location:1 → 42
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

  2. XM_046932694.1 → XP_046788650.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

  3. XM_046932696.1 → XP_046788652.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

  4. XM_046932695.1 → XP_046788651.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3

  5. XM_040690649.2 → XP_040546583.1  OTU domain-containing protein 7B

    UniProtKB/TrEMBL
    A0A8V1AA35, A0A8V1AHL3
    Conserved Domains (2) summary
    smart00259
    Location:818 → 841
    ZnF_A20; A20-like zinc fingers
    cd14347
    Location:1 → 42
    UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
Nucleotide Protein
Heading Accession and Version

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