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MTCL1 microtubule crosslinking factor 1 [ Gallus gallus (chicken) ]

Gene ID: 426050, updated on 3-Dec-2024

Summary

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Symbol
MTCL1provided by CGNC
Full Name
microtubule crosslinking factor 1provided by CGNC
Primary source
CGNC:10057
See related
Ensembl:ENSGALG00010001880
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SOGA2; CCDC165
Orthologs
human mouse all
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Genomic context

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See MTCL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (98371494..98473716, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (98430606..98532869, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751800 Neighboring gene uncharacterized LOC101751848 Neighboring gene uncharacterized LOC121109931 Neighboring gene RAB12, member RAS oncogene family Neighboring gene protein tyrosine phosphatase, receptor type M Neighboring gene uncharacterized LOC121109718

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • KIAA0802

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment or maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule bundle formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apicolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule bundle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in midbody IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule cross-linking factor 1
Names
SOGA family member 2
coiled-coil domain containing 165

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    98371494..98473716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040687948.2 → XP_040543882.2  microtubule cross-linking factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X3Y1
    Related
    ENSGALP00010002593.1, ENSGALT00010004305.1

  2. XM_040687922.2 → XP_040543856.2  microtubule cross-linking factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XDB1, A0A8V0XDC6
    Related
    ENSGALP00010002595.1, ENSGALT00010004307.1

  3. XM_040687905.2 → XP_040543839.2  microtubule cross-linking factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XDT0

  4. XM_046938082.1 → XP_046794038.1  microtubule cross-linking factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XDT0

  5. XM_046938083.1 → XP_046794039.1  microtubule cross-linking factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XDS0

  6. XM_040687996.2 → XP_040543930.2  microtubule cross-linking factor 1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0X3Y1
    Related
    ENSGALP00010002577.1, ENSGALT00010004284.1

  7. XM_040687987.2 → XP_040543921.2  microtubule cross-linking factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XDB1
    Related
    ENSGALP00010002580.1, ENSGALT00010004287.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    98430606..98532869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040664924.2 → XP_040520858.2  microtubule cross-linking factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0X3Y1

  2. XM_040664921.2 → XP_040520855.2  microtubule cross-linking factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XDB1

  3. XM_040664919.2 → XP_040520853.2  microtubule cross-linking factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XDT0

  4. XM_046912508.1 → XP_046768464.1  microtubule cross-linking factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XDT0

  5. XM_046912509.1 → XP_046768465.1  microtubule cross-linking factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XDS0

  6. XM_040664930.2 → XP_040520864.2  microtubule cross-linking factor 1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0X3Y1

  7. XM_040664929.2 → XP_040520863.2  microtubule cross-linking factor 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XDB1
Nucleotide Protein Strain
Heading Accession and Version

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