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MVB12A multivesicular body subunit 12A [ Gallus gallus (chicken) ]

Gene ID: 426089, updated on 3-Dec-2024

Summary

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Symbol
MVB12Aprovided by CGNC
Full Name
multivesicular body subunit 12Aprovided by CGNC
Primary source
CGNC:10104
See related
Ensembl:ENSGALG00010002573
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
FAM125A
Orthologs
human mouse all
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Genomic context

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See MVB12A in Genome Data Viewer
Location:
chromosome: 30
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 30 NC_052561.1 (495195..499885)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 30 NC_052602.1 (58890..63582)

Chromosome 30 - NC_052561.1Genomic Context describing neighboring genes Neighboring gene PBX homeobox 4 Neighboring gene DSN1 homolog, MIS12 kinetochore complex component Neighboring gene ATPase 13A1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene LIM homeobox transcription factor 1-alpha-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosome to lysosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in viral budding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in virus maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multivesicular body subunit 12A
Names
ESCRT-I complex subunit MVB12A
Protein FAM125A
family with sequence similarity 125, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397561.1 → NP_001384490.1  multivesicular body subunit 12A

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000389
    UniProtKB/Swiss-Prot
    Q5ZJX7
    UniProtKB/TrEMBL
    A0A1D5NVM6
    Related
    ENSGALP00010003668.1, ENSGALT00010005902.1
    Conserved Domains (1) summary
    pfam10240
    Location:9 → 255
    DUF2464; Multivesicular body subunit 12

RNA

  1. NR_173991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000389

  2. NR_173992.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000389

  3. NR_173993.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000389

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052561.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    495195..499885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052602.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    58890..63582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZJX7.1 GenPept UniProtKB/Swiss-Prot:Q5ZJX7

Gene LinkOut

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