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lqfR liquid facets-Related [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42632, updated on 9-Dec-2024

Summary

Official Symbol
lqfRprovided by FlyBase
Official Full Name
liquid facets-Relatedprovided by FlyBase
Primary source
FLYBASE:FBgn0261279
Locus tag
Dmel_CG42250
See related
AllianceGenome:FB:FBgn0261279
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13853; CG13854; CG31170; CG31285; CG42250; Dmel\CG42250; dTel2; epsin; Epsin; epsin-like; epsin02; epsinR; l(3)03685; l(3)A9; l(3)dsl-9; l(3)dsl9; l(3)SG62; l(3)XII-10; Lqfr; LqfR; Tel2; XII-10
Old locus tag
Dmel_CG31170; Dmel_CG31285
Summary
Predicted to enable clathrin binding activity and phospholipid binding activity. Involved in oogenesis. Located in early endosome; nucleus; and trans-Golgi network. Is expressed in several structures, including embryonic/larval midgut primordium; germline cell; gland; gut section; and imaginal disc. Orthologous to human CLINT1 (clathrin interactor 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See lqfR in Genome Data Viewer
Location:
94A12-94A12; 3-74 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22411301..22419051)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18237023..18244773)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Nop56 Neighboring gene mob as tumor suppressor

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables clathrin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in oogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
part_of clathrin vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in early endosome IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
liquid facets-Related
Names
CG42250-PC
CG42250-PD
EpsinR
epsin-2
epsin-like
lethal (3) SG62
liquid facet related
liquid facets related
liquid-facets related
lqfR-PC
lqfR-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    22411301..22419051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_170009.4NP_732734.3  liquid facets-Related, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732734.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95SS7, Q9NH51, Q9VD13
    Conserved Domains (2) summary
    cd03571
    Location:27150
    ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...
    pfam15050
    Location:204283
    SCIMP; SCIMP protein
  2. NM_170011.3NP_732736.2  liquid facets-Related, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732736.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IN05
    Conserved Domains (3) summary
    cd03571
    Location:27150
    ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...
    pfam10193
    Location:10721184
    Telomere_reg-2; Telomere length regulation protein
    pfam13254
    Location:226459
    DUF4045; Domain of unknown function (DUF4045)