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THOP1 thimet oligopeptidase 1 [ Gallus gallus (chicken) ]

Gene ID: 426398, updated on 17-Aug-2024

Summary

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Symbol
THOP1provided by CGNC
Full Name
thimet oligopeptidase 1provided by CGNC
Primary source
CGNC:52774
See related
Ensembl:ENSGALG00010027502
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See THOP1 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (3683913..3691701, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (3246493..3254284, complement)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 6 Neighboring gene proprotein convertase subtilisin/kexin type 4 Neighboring gene ADAMTS like 5 Neighboring gene small glutamine rich tetratricopeptide repeat containing alpha Neighboring gene solute carrier family 39 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thimet oligopeptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3683913..3691701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_424048.8 → XP_424048.3  thimet oligopeptidase

    UniProtKB/TrEMBL
    A0A8V1A9D7
    Related
    ENSGALP00010040793.1, ENSGALT00010066623.1
    Conserved Domains (1) summary
    cd06455
    Location:31 → 672
    M3A_TOP; Peptidase M3 thimet oligopeptidase (TOP), also includes neurolysin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3246493..3254284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040692788.2 → XP_040548722.1  thimet oligopeptidase

    UniProtKB/TrEMBL
    A0A8V1A9D7
    Conserved Domains (1) summary
    cd06455
    Location:31 → 672
    M3A_TOP; Peptidase M3 thimet oligopeptidase (TOP), also includes neurolysin
Nucleotide Protein
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