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CARNMT1 carnosine N-methyltransferase 1 [ Gallus gallus (chicken) ]

Gene ID: 427256, updated on 17-Aug-2024

Summary

Official Symbol
CARNMT1provided by CGNC
Official Full Name
carnosine N-methyltransferase 1provided by CGNC
Primary source
CGNC:11279
See related
Ensembl:ENSGALG00010015413
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
C9orf41; CZH9ORF41
Orthologs
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Genomic context

See CARNMT1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (37427432..37449416, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (37427432..37449416, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112530580 Neighboring gene uncharacterized LOC121108627 Neighboring gene C9orf40 homolog Neighboring gene nicotinamide riboside kinase 1 Neighboring gene osteoclast stimulating factor 1 Neighboring gene uncharacterized LOC121108630 Neighboring gene uncharacterized LOC121108628

Genomic regions, transcripts, and products

Pathways from PubChem

General protein information

Preferred Names
carnosine N-methyltransferase
NP_001383538.1
NP_001383539.1
XP_025001035.1
XP_046761330.1
XP_046761331.1
XP_046791063.1
XP_046791064.1
XP_046791065.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396609.1NP_001383538.1  carnosine N-methyltransferase

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has exons 1, 2, 3, 4, 5, 7, 8, 9, and 10.
    Source sequence(s)
    AJ719383, BU105588, BU108886, BU211404, CF253952
    UniProtKB/Swiss-Prot
    F1N9S8
    UniProtKB/TrEMBL
    A0A0G3FDI9
    Related
    ENSGALP00010021531.1, ENSGALT00010037014.1
    Conserved Domains (1) summary
    pfam07942
    Location:180444
    N2227; N2227-like protein
  2. NM_001396610.1NP_001383539.1  carnosine N-methyltransferase

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has exons 1, 2, 3, 4, 6, 7, 8, and 9.
    Source sequence(s)
    AJ719383, AJ742405, AJ742412, BU105588, BU108886, BU211404, BU228273, BU316360, CR524173, DT657474

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    37427432..37449416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025145267.3XP_025001035.1  carnosine N-methyltransferase isoform X1

    Conserved Domains (1) summary
    pfam07942
    Location:66330
    N2227; N2227-like protein
  2. XM_046905375.1XP_046761331.1  carnosine N-methyltransferase isoform X1

  3. XM_046905374.1XP_046761330.1  carnosine N-methyltransferase isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    37427432..37449416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046935107.1XP_046791063.1  carnosine N-methyltransferase isoform X1

  2. XM_046935109.1XP_046791065.1  carnosine N-methyltransferase isoform X1

  3. XM_046935108.1XP_046791064.1  carnosine N-methyltransferase isoform X1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001031425.1: Suppressed sequence

    Description
    NM_001031425.1: This RefSeq was temporarily suppressed because there were several differences compared to available sequence data. These differences resulted in premature translation termination and a protein that is not supported by protein homology.