TRPM1 transient receptor potential cation channel subfamily M member 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: TRPM1provided by CGNC
Full Name: transient receptor potential cation channel subfamily M member 1provided by CGNC
Primary source: CGNC:2818
See related: Ensembl:ENSGALG00010024748
Gene type: protein coding
RefSeq status: MODEL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 33

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	10	NC_052541.1 (5618486..5749124)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	10	NC_052582.1 (5492627..5623549)

Chromosome 10 - NC_052541.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

ST10BE508 (e-PCR)
- UniSTS:466471

ST10BE516 (e-PCR)
- UniSTS:466473

ST10BE522 (e-PCR)
- UniSTS:466474

ST10BE523 (e-PCR)
- UniSTS:466475

ST10BE519 (e-PCR)
- UniSTS:469856

ST10BE539 (e-PCR)
- UniSTS:469868

ST10BE556 (e-PCR)
- UniSTS:469879

T10BE042 (e-PCR)
- UniSTS:470142

T10BE114 (e-PCR)
- UniSTS:470208

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium channel activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in calcium ion transport into cytosol	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein tetramerization	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transient receptor potential cation channel subfamily M member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

5618486..5749124

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046899254.1 → XP_046755210.1 transient receptor potential cation channel subfamily M member 1 isoform X4
XM_040706834.2 → XP_040562768.1 transient receptor potential cation channel subfamily M member 1 isoform X2

Conserved Domains (1) summary

TIGR00870
Location:733 → 1149

trp; transient-receptor-potential calcium channel protein
XM_040706835.2 → XP_040562769.1 transient receptor potential cation channel subfamily M member 1 isoform X3

Conserved Domains (1) summary

TIGR00870
Location:686 → 1108

trp; transient-receptor-potential calcium channel protein
XM_040706833.1 → XP_040562767.1 transient receptor potential cation channel subfamily M member 1 isoform X1

UniProtKB/TrEMBL

A0A8V1A1W4

Related

ENSGALP00010037170.1, ENSGALT00010060411.1

Conserved Domains (1) summary

TIGR00870
Location:733 → 1155

trp; transient-receptor-potential calcium channel protein
XM_015278984.2 → XP_015134470.1 transient receptor potential cation channel subfamily M member 1 isoform X5

Conserved Domains (2) summary

pfam00520
Location:783 → 1012

Ion_trans; Ion transport protein

pfam16519
Location:1110 → 1161

TRPM_tetra; Tetramerization domain of TRPM

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

5492627..5623549

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046925215.1 → XP_046781171.1 transient receptor potential cation channel subfamily M member 1 isoform X4
XM_040680636.2 → XP_040536570.1 transient receptor potential cation channel subfamily M member 1 isoform X2

Conserved Domains (1) summary

TIGR00870
Location:733 → 1149

trp; transient-receptor-potential calcium channel protein
XM_040680637.2 → XP_040536571.1 transient receptor potential cation channel subfamily M member 1 isoform X3

Conserved Domains (1) summary

TIGR00870
Location:686 → 1108

trp; transient-receptor-potential calcium channel protein
XM_040680634.2 → XP_040536568.1 transient receptor potential cation channel subfamily M member 1 isoform X1

UniProtKB/TrEMBL

A0A8V1A1W4

Conserved Domains (1) summary

TIGR00870
Location:733 → 1155

trp; transient-receptor-potential calcium channel protein
XM_040680635.1 → XP_040536569.1 transient receptor potential cation channel subfamily M member 1 isoform X1

UniProtKB/TrEMBL

A0A8V1A1W4

Conserved Domains (1) summary

TIGR00870
Location:733 → 1155

trp; transient-receptor-potential calcium channel protein
XM_040680639.1 → XP_040536573.1 transient receptor potential cation channel subfamily M member 1 isoform X5