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CNTNAP1 contactin associated protein 1 [ Gallus gallus (chicken) ]

Gene ID: 428309, updated on 17-Aug-2024

Summary

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Official Symbol
CNTNAP1provided by CGNC
Official Full Name
contactin associated protein 1provided by CGNC
Primary source
CGNC:53330
See related
Ensembl:ENSGALG00010022182
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CNTNAP1 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
24
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (5002916..5011333)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (6164939..6173352)

Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology, MyTH4 and FERM domain containing H3 Neighboring gene C-C motif chemokine receptor 10 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit Neighboring gene receptor activity modifying protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
contactin-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5002916..5011333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015299638.4 → XP_015155124.1  contactin-associated protein 1

    UniProtKB/TrEMBL
    A0A8V0ZPB7
    Related
    ENSGALP00010032511.1, ENSGALT00010053975.1
    Conserved Domains (6) summary
    smart00294
    Location:1260 → 1277
    4.1m; putative band 4.1 homologues' binding motif
    cd00057
    Location:42 → 173
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:180 → 336
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:550 → 581
    EGF; EGF-like domain
    pfam02210
    Location:1048 → 1178
    Laminin_G_2; Laminin G domain
    cl00085
    Location:590 → 664
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6164939..6173352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040692338.2 → XP_040548272.1  contactin-associated protein 1

    UniProtKB/TrEMBL
    A0A8V0ZPB7
    Conserved Domains (6) summary
    smart00294
    Location:1260 → 1277
    4.1m; putative band 4.1 homologues' binding motif
    cd00057
    Location:42 → 173
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    cd00110
    Location:180 → 336
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:550 → 581
    EGF; EGF-like domain
    pfam02210
    Location:1048 → 1178
    Laminin_G_2; Laminin G domain
    cl00085
    Location:590 → 664
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein Strain
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