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DDX43 DEAD-box helicase 43 [ Gallus gallus (chicken) ]

Gene ID: 428637, updated on 17-Aug-2024

Summary

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Symbol
DDX43provided by CGNC
Full Name
DEAD-box helicase 43provided by CGNC
Primary source
CGNC:53420
See related
Ensembl:ENSGALG00010001550
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See DDX43 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (81225156..81242157, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (81015008..81032021, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 Neighboring gene mitochondrial tRNA translation optimization 1 Neighboring gene cyclic GMP-AMP synthase Neighboring gene potassium voltage-gated channel subfamily Q member 5 Neighboring gene microRNA 7465 Neighboring gene uncharacterized LOC124418357

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX43
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
XP_040522656.1
XP_426195.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    81225156..81242157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_426195.8 → XP_426195.5  probable ATP-dependent RNA helicase DDX43

    UniProtKB/TrEMBL
    A0A8V0X600
    Related
    ENSGALP00010002001.1, ENSGALT00010003566.1
    Conserved Domains (2) summary
    smart00322
    Location:80 → 140
    KH; K homology RNA-binding domain
    PTZ00110
    Location:186 → 617
    PTZ00110; helicase; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    81015008..81032021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040666722.2 → XP_040522656.1  probable ATP-dependent RNA helicase DDX43

    Conserved Domains (2) summary
    smart00322
    Location:80 → 140
    KH; K homology RNA-binding domain
    PTZ00110
    Location:186 → 617
    PTZ00110; helicase; Provisional
Nucleotide Protein
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