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SLC44A5 solute carrier family 44 member 5 [ Gallus gallus (chicken) ]

Gene ID: 429117, updated on 17-Aug-2024

Summary

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Symbol
SLC44A5provided by CGNC
Full Name
solute carrier family 44 member 5provided by CGNC
Primary source
CGNC:8651
See related
Ensembl:ENSGALG00010024058
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SLC44A5 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (29385032..29471934, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (29397167..29484108, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene crystallin zeta Neighboring gene tRNA-yW synthesizing protein 3 homolog Neighboring gene LIM homeobox 8 Neighboring gene small nucleolar RNA SNORD45 Neighboring gene small nucleolar RNA SNORD45 Neighboring gene Rab geranylgeranyltransferase beta subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline transporter-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    29385032..29471934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004936912.5 → XP_004936969.1  choline transporter-like protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A1D5P952
    Related
    ENSGALP00010035649.1, ENSGALT00010058637.1
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 678
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_426673.8 → XP_426673.2  choline transporter-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3AVJ7
    Related
    ENSGALP00010035643.1, ENSGALT00010058631.1
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 683
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_040705215.1 → XP_040561149.1  choline transporter-like protein 5 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2UFC1
    Related
    ENSGALP00010035633.1, ENSGALT00010058619.1

  4. XM_004936913.5 → XP_004936970.1  choline transporter-like protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZXN6
    Related
    ENSGALP00010035641.1, ENSGALT00010058629.1
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 678
    Choline_transpo; Plasma-membrane choline transporter

  5. XM_004936914.5 → XP_004936971.1  choline transporter-like protein 5 isoform X4

    Conserved Domains (1) summary
    pfam04515
    Location:326 → 650
    Choline_transpo; Plasma-membrane choline transporter

RNA

  1. XR_001467890.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    29397167..29484108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678274.2 → XP_040534208.1  choline transporter-like protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A1D5P952
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 678
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_040678273.2 → XP_040534207.1  choline transporter-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3AVJ7
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 683
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_040678277.1 → XP_040534211.1  choline transporter-like protein 5 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2UFC1

  4. XM_040678275.2 → XP_040534209.1  choline transporter-like protein 5 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZXN6
    Conserved Domains (1) summary
    pfam04515
    Location:326 → 678
    Choline_transpo; Plasma-membrane choline transporter

  5. XM_040678276.2 → XP_040534210.1  choline transporter-like protein 5 isoform X4

    Conserved Domains (1) summary
    pfam04515
    Location:326 → 650
    Choline_transpo; Plasma-membrane choline transporter

RNA

  1. XR_005852304.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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