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jigr1 jing interacting gene regulatory 1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43093, updated on 4-Jan-2025

Summary

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Official Symbol
jigr1provided by FlyBase
Official Full Name
jing interacting gene regulatory 1provided by FlyBase
Primary source
FLYBASE:FBgn0039350
Locus tag
Dmel_CG17383
See related
AllianceGenome:FB:FBgn0039350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
bs29f05.y1; CG17383; Dmel\CG17383; JIGR-1; JIGR1; son
Summary
Predicted to enable transcription cis-regulatory region binding activity. Involved in neuroblast differentiation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including antennal anlage; cuboidal/columnar epithelium; ganglia; head epidermis primordium; and imaginal disc. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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See jigr1 in Genome Data Viewer
Location:
96E6-96E6; 3-88 cM
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (25637843..25651874)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (21463565..21476119)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Nuclear protein localization 4 Neighboring gene uncharacterized protein Neighboring gene Succinic semialdehyde dehydrogenase Neighboring gene long non-coding RNA:CR45917 Neighboring gene mir-92a stem loop Neighboring gene mir-92b stem loop Neighboring gene antisense RNA:CR46101 Neighboring gene tankyrase Neighboring gene antisense RNA:CR45208 Neighboring gene Ras association domain family member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. miR-92b regulates Mef2 levels through a negative-feedback circuit during Drosophila muscle development. Chen Z, et al. Development, 2012 Oct. PMID 22899845, Free PMC Article
  2. Downregulation of the Host Gene jigr1 by miR-92 Is Essential for Neuroblast Self-Renewal in Drosophila. Yuva-Aydemir Y, et al. PLoS Genet, 2015 May. PMID 26000445, Free PMC Article
  3. Son of Notch, a winged-helix gene involved in boundary formation in the Drosophila wing. Park E, et al. IUBMB Life, 2007 Dec. PMID 18085478, Free PMC Article
  4. A role for the serine/arginine-rich (SR) protein B52/SRSF6 in cell growth and myc expression in Drosophila. Fernando C, et al. Genetics, 2015 Apr. PMID 25680814, Free PMC Article
  5. Glial and neuronal functions of the Drosophila homolog of the human SWI/SNF gene ATR-X (DATR-X) and the jing zinc-finger gene specify the lateral positioning of longitudinal glia and axons. Sun X, et al. Genetics, 2006 Jul. PMID 16648585, Free PMC Article

See all (50) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables transcription cis-regulatory region binding ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuroblast differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of gene expression ISM
Inferred from Sequence Model
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
 PubMed 
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
jing interacting gene regulatory 1
Names
CG17383-PA
CG17383-PB
CG17383-PC
CG17383-PD
CG17383-PE
CG17383-PF
CG17383-PG
CG17383-PH
jigr1-PA
jigr1-PB
jigr1-PC
jigr1-PD
jigr1-PE
jigr1-PF
jigr1-PG
jigr1-PH
son of notch

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    25637843..25651874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001347754.1 → NP_001334702.1  jing interacting gene regulatory 1, isoform H [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5

  2. NM_001104450.2 → NP_001097920.1  jing interacting gene regulatory 1, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097920.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  3. NM_143152.4 → NP_651409.1  jing interacting gene regulatory 1, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651409.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Related
    FBpp0084261
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  4. NM_170233.2 → NP_733112.1  jing interacting gene regulatory 1, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733112.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Related
    FBpp0084260
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  5. NM_170235.3 → NP_733114.1  jing interacting gene regulatory 1, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733114.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Related
    FBpp0084262
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  6. NM_170234.1 → NP_733113.1  jing interacting gene regulatory 1, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733113.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Related
    FBpp0084263, FBtr0084889
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  7. NM_001104451.2 → NP_001097921.1  jing interacting gene regulatory 1, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097921.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain

  8. NM_001276033.1 → NP_001262962.1  jing interacting gene regulatory 1, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262962.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VBP5
    Conserved Domains (1) summary
    smart00595
    Location:33 → 118
    MADF; subfamily of SANT domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VBP5 Q9VBP5

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