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Cipc Clock interacting protein circadian [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43177, updated on 9-Dec-2024

Summary

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Official Symbol
Cipcprovided by FlyBase
Official Full Name
Clock interacting protein circadianprovided by FlyBase
Primary source
FLYBASE:FBgn0051324
Locus tag
Dmel_CG31324
See related
AllianceGenome:FB:FBgn0051324
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RH68619; CG14555; CG14557; CG31324; Dmel\CG31324
Summary
Involved in negative regulation of DNA-templated transcription and negative regulation of circadian rhythm. Is expressed in embryonic brain; embryonic/larval crystal cell; embryonic/larval midgut; and larval ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See Cipc in Genome Data Viewer
Location:
96F14-97A1; 3-90 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (26106868..26130674)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (21932590..21956396)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44950 Neighboring gene dysfusion Neighboring gene long non-coding RNA:CR44319 Neighboring gene long non-coding RNA:CR46060 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Litovchenko M, et al. Sci Adv, 2021 Jan. PMID 33514540, Free PMC Article
  2. CLOCKWORK ORANGE promotes CLOCK-CYCLE activation via the putative Drosophila ortholog of CLOCK INTERACTING PROTEIN CIRCADIAN. Rivas GBS, et al. Curr Biol, 2021 Oct 11. PMID 34331859, Free PMC Article
  3. Microarray analysis of juvenile hormone response in Drosophila melanogaster S2 cells. Willis DK, et al. J Insect Sci, 2010. PMID 20672983, Free PMC Article
  4. Divergence in Transcriptional and Regulatory Responses to Mating in Male and Female Fruitflies. Fowler EK, et al. Sci Rep, 2019 Nov 6. PMID 31695054, Free PMC Article
  5. Identification of transcriptional responsive genes to acetic acid, ethanol, and 2-phenylethanol exposure in Drosophila melanogaster. Seong KM, et al. Pestic Biochem Physiol, 2020 May. PMID 32359537

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

mobile_element

  • Loc: 26108880-26117406 mobile_element_type = transposon:Tirant{}1423

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
clock interacting protein circadian
Names
CG31324-PA
CG31324-PB
CG31324-PC
Cipc-PA
Cipc-PB
Cipc-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    26106868..26130674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001276054.1 → NP_001262983.1  clock interacting protein circadian, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262983.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95R29

  2. NM_170259.4 → NP_733138.1  clock interacting protein circadian, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_733138.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95R29
    Related
    FBpp0084358

  3. NM_001276055.1 → NP_001262984.1  clock interacting protein circadian, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262984.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KHX8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KHX8 A0A0B4KHX8
Q95R29 Q95R29

Gene LinkOut

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