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Fam246a family with sequence similarity 246 member A [ Mus musculus (house mouse) ]

Gene ID: 433004, updated on 2-Nov-2024

Summary

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Official Symbol
Fam246aprovided by MGI
Official Full Name
family with sequence similarity 246 member Aprovided by MGI
Primary source
MGI:MGI:3045365
See related
AllianceGenome:MGI:3045365
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G3R1; B830017H08Rik
Summary
Is expressed in several structures, including gonad; gut gland; hemolymphoid system gland; liver; and lung. Orthologous to several human genes including FAM246A (family with sequence similarity 246 member A) and FAM246B (family with sequence similarity 246 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in kidney adult (RPKM 2.9), testis adult (RPKM 2.5) and 8 other tissues See more
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Genomic context

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See Fam246a in Genome Data Viewer
Location:
16 A3; 16 11.05 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (17650983..17652883)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (17833119..17835019)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F, member 2 Neighboring gene VISTA enhancer mm1629 Neighboring gene zinc finger protein 520, pseudogene Neighboring gene STARR-seq mESC enhancer starr_40262 Neighboring gene carbonic anhydrase 15 Neighboring gene DiGeorge syndrome critical region gene 2 Neighboring gene STARR-positive B cell enhancer ABC_E4159

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of a novel lncRNA (G3R1) regulated by GLIS3 in pancreatic β-cells. Scoville DW, et al. J Mol Endocrinol, 2020 Oct. PMID 32668405, Free PMC Article
  2. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification of a novel lncRNA (G3R1) regulated by GLIS3 in pancreatic beta-cells.
    Title: Identification of a novel lncRNA (G3R1) regulated by GLIS3 in pancreatic β-cells.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_197398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078895

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    17650983..17652883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001002790.1: Suppressed sequence

    Description
    NM_001002790.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NR_027959.1: Suppressed sequence

    Description
    NR_027959.1: This RefSeq was removed because currently there is insufficient support for the transcript.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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