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LOC4339463 glycosyltransferase family protein 64 protein C5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339463, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4339463
Gene description
glycosyltransferase family protein 64 protein C5
Locus tag
OSNPB_050540000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GINT1
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Genomic context

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See LOC4339463 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26942761..26946721)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26824477..26828495)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein REVERSION-TO-ETHYLENE SENSITIVITY1 Neighboring gene uncharacterized protein ycf36 Neighboring gene flap endonuclease 1-A-like Neighboring gene uncharacterized protein At4g29660

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase. Ishikawa T, et al. Plant Physiol, 2018 Jul. PMID 29760197, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GINT1 is responsible for HexN(Ac)-glycosylinositol phosphorylceramides synthesis and normal growth in rice.
    Title: GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine inositolphosphorylceramide transferase 1
Names
Glucosamine inositolphosphorylceramide transferase 1
LOC_Os05g46260
OSJNBa0052K01.21
OSNPB_050540000
NP_001407775.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420846.1 → NP_001407775.1  glucosamine inositolphosphorylceramide transferase 1

    Status: VALIDATED

    Source sequence(s)
    AK100416, CB649438, CB655573, CB655574, CB663236, CI285722
    UniProtKB/Swiss-Prot
    A2Y6Z7, Q53WK1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    26942761..26946721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q53WK1.1 GenPept UniProtKB/Swiss-Prot:Q53WK1

Gene LinkOut

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Molecular Biology Databases
Research Materials