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Gvin3 GTPase, very large interferon inducible, family member 3 [ Mus musculus (house mouse) ]

Gene ID: 434223, updated on 27-Nov-2024

Summary

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Official Symbol
Gvin3provided by MGI
Official Full Name
GTPase, very large interferon inducible, family member 3provided by MGI
Primary source
MGI:MGI:3584360
See related
AllianceGenome:MGI:3584360
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1966
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gvin3 in Genome Data Viewer
Location:
7 E3; 7 56.01 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (106194756..106243853, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (106595549..106644646, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 8995 Neighboring gene STARR-positive B cell enhancer ABC_E6582 Neighboring gene STARR-positive B cell enhancer ABC_E6583 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113694817-113695117 Neighboring gene STARR-seq mESC enhancer starr_19751 Neighboring gene predicted gene, 39065 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113787240-113787541 Neighboring gene STARR-seq mESC enhancer starr_19753 Neighboring gene olfactory receptor family 2 subfamily AG member 12 Neighboring gene olfactory receptor family 2 subfamily AG member 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The genetic program of hematopoietic stem cells. Phillips RL, et al. Science, 2000 Jun 2. PMID 10834841
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Interferon-induced very large GTPase 3; interferon-induced very large GTPase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277179.1 → NP_001264108.1  Interferon-induced very large GTPase 3

    See identical proteins and their annotated locations for NP_001264108.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript. Variants 1-5 encode the same protein.
    Source sequence(s)
    AC135236, AC147246, AK171325, BU695302
    UniProtKB/TrEMBL
    Q3TBC0
    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_001277180.1 → NP_001264109.1  Interferon-induced very large GTPase 3

    See identical proteins and their annotated locations for NP_001264109.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AC135236, AC147246, AK171325, BU695302
    UniProtKB/TrEMBL
    Q3TBC0
    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001277181.1 → NP_001264110.1  Interferon-induced very large GTPase 3

    See identical proteins and their annotated locations for NP_001264110.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AC135236, AC147246, AC147554, AK171325, BU695302
    UniProtKB/TrEMBL
    Q3TBC0
    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. NM_001277182.1 → NP_001264111.1  Interferon-induced very large GTPase 3

    See identical proteins and their annotated locations for NP_001264111.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AC135236, AC147246, AC147554, AK171325, BU695302
    UniProtKB/TrEMBL
    Q3TBC0
    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. NM_001277183.1 → NP_001264112.1  Interferon-induced very large GTPase 3

    See identical proteins and their annotated locations for NP_001264112.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
    Source sequence(s)
    AC135236, AC147246, AC147554, AK171325, BU695302
    UniProtKB/TrEMBL
    Q3TBC0
    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    106194756..106243853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241840.1 → XP_011240142.1  interferon-induced very large GTPase 3 isoform X1

    See identical proteins and their annotated locations for XP_011240142.1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_017322335.1 → XP_017177824.1  interferon-induced very large GTPase 3 isoform X1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_011241842.1 → XP_011240144.1  interferon-induced very large GTPase 3 isoform X1

    See identical proteins and their annotated locations for XP_011240144.1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. XM_011241841.1 → XP_011240143.1  interferon-induced very large GTPase 3 isoform X1

    See identical proteins and their annotated locations for XP_011240143.1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_036153219.1 → XP_036009112.1  interferon-induced very large GTPase 3 isoform X1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  6. XM_011241839.1 → XP_011240141.1  interferon-induced very large GTPase 3 isoform X1

    See identical proteins and their annotated locations for XP_011240141.1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  7. XM_036153218.1 → XP_036009111.1  interferon-induced very large GTPase 3 isoform X1

    Conserved Domains (1) summary
    cl38936
    Location:1487 → 1565
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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