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Pate9 prostate and testis expressed 9 [ Mus musculus (house mouse) ]

Gene ID: 434396, updated on 27-Nov-2024

Summary

Official Symbol
Pate9provided by MGI
Official Full Name
prostate and testis expressed 9provided by MGI
Primary source
MGI:MGI:3647347
See related
Ensembl:ENSMUSG00000074448 AllianceGenome:MGI:3647347
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5615; Pate-H; EG434396
Expression
Low expression observed in reference dataset See more
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Genomic context

See Pate9 in Genome Data Viewer
Location:
9 A4; 9 20.65 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (36443699..36453259, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (36532403..36541963, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene prostate and testis expressed 12 Neighboring gene prostate and testis expressed 11 Neighboring gene STARR-seq mESC enhancer starr_23781 Neighboring gene STARR-seq mESC enhancer starr_23782 Neighboring gene prostate and testis expressed 8 Neighboring gene prostate and testis expressed 14

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
prostate and testis expressed H

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033783.2NP_001028955.1  prostate and testis expressed H precursor

    See identical proteins and their annotated locations for NP_001028955.1

    Status: VALIDATED

    Source sequence(s)
    AC159896
    Consensus CDS
    CCDS52766.1
    UniProtKB/TrEMBL
    Q3UW02
    Related
    ENSMUSP00000096499.2, ENSMUST00000098900.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    36443699..36453259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)