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Platr25 pluripotency associated transcript 25 [ Mus musculus (house mouse) ]

Gene ID: 435366, updated on 2-Nov-2024

Summary

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Official Symbol
Platr25provided by MGI
Official Full Name
pluripotency associated transcript 25provided by MGI
Primary source
MGI:MGI:3645613
See related
Ensembl:ENSMUSG00000074863 AllianceGenome:MGI:3645613
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5665; EG435366; 6720490N10Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Platr25 in Genome Data Viewer
Location:
13 B3; 13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62819598..62909816, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62671784..62762002, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 1008 Neighboring gene STARR-positive B cell enhancer mm9_chr13:62725440-62725741 Neighboring gene predicted gene, 36298 Neighboring gene STARR-seq mESC enhancer starr_34777 Neighboring gene STARR-seq mESC enhancer starr_34778 Neighboring gene STARR-positive B cell enhancer mm9_chr13:62786016-62786317 Neighboring gene calcium binding and coiled-coil domain 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_34780 Neighboring gene STARR-positive B cell enhancer ABC_E4073 Neighboring gene STARR-seq mESC enhancer starr_34782 Neighboring gene microRNA 713 Neighboring gene prothymosin alpha-like Neighboring gene STARR-positive B cell enhancer ABC_E1878 Neighboring gene predicted gene 5141 Neighboring gene predicted gene, 25448

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
  2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
pluripotency associated transcript 25; zinc finger protein 782

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    62819598..62909816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055019620.1 → XP_054875595.1  zinc finger protein 782 isoform X2

  2. XM_055019621.1 → XP_054875596.1  zinc finger protein 782 isoform X2

  3. XM_055019622.1 → XP_054875597.1  zinc finger protein 782 isoform X2

  4. XM_055019619.1 → XP_054875594.1  zinc finger protein 782 isoform X2

  5. XM_055019625.1 → XP_054875600.1  zinc finger protein 782 isoform X3

  6. XM_055019616.1 → XP_054875591.1  zinc finger protein 782 isoform X2

  7. XM_055019618.1 → XP_054875593.1  zinc finger protein 782 isoform X2

  8. XM_055019617.1 → XP_054875592.1  zinc finger protein 782 isoform X2

  9. XM_055019630.1 → XP_054875605.1  zinc finger protein 782 isoform X6

    UniProtKB/TrEMBL
    A0A1Y7VIZ1
    Related
    ENSMUSP00000152199.2, ENSMUST00000220733.2

  10. XM_055019628.1 → XP_054875603.1  zinc finger protein 782 isoform X4

  11. XM_055019627.1 → XP_054875602.1  zinc finger protein 782 isoform X4

  12. XM_055019623.1 → XP_054875598.1  zinc finger protein 782 isoform X2

  13. XM_055019626.1 → XP_054875601.1  zinc finger protein 782 isoform X3

  14. XM_055019624.1 → XP_054875599.1  zinc finger protein 782 isoform X2

  15. XM_055019631.1 → XP_054875606.1  zinc finger protein 782 isoform X7

    UniProtKB/TrEMBL
    A0A1Y7VIS4
    Related
    ENSMUSP00000152117.2, ENSMUST00000221996.2

  16. XM_055019629.1 → XP_054875604.1  zinc finger protein 782 isoform X5

  17. XM_055019615.1 → XP_054875590.1  zinc finger protein 782 isoform X1

    Related
    ENSMUSP00000152582.2, ENSMUST00000222477.2

  18. XM_055019634.1 → XP_054875609.1  zinc finger protein 782 isoform X8

    UniProtKB/TrEMBL
    A0A1Y7VLS7
    Related
    ENSMUSP00000152625.2, ENSMUST00000222602.2

  19. XM_055019633.1 → XP_054875608.1  zinc finger protein 782 isoform X8

    UniProtKB/TrEMBL
    A0A1Y7VLS7

  20. XM_055019632.1 → XP_054875607.1  zinc finger protein 782 isoform X8

    UniProtKB/TrEMBL
    A0A1Y7VLS7

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013825.2: Suppressed sequence

    Description
    NM_001013825.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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