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tcta T cell leukemia translocation altered [ Danio rerio (zebrafish) ]

Gene ID: 436858, updated on 4-Jan-2025

Summary

Official Symbol
tctaprovided by ZNC
Official Full Name
T cell leukemia translocation alteredprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-325
See related
Ensembl:ENSDARG00000044194 AllianceGenome:ZFIN:ZDB-GENE-040718-325
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92721; wu:fb06g04
Summary
Predicted to be involved in osteoclast fusion. Predicted to be located in membrane. Orthologous to human TCTA (T cell leukemia translocation altered). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See tcta in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (43015916..43019222)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (43018380..43021686)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 Neighboring gene si:ch73-361p23.3 Neighboring gene tumor necrosis factor receptor superfamily, member 18 Neighboring gene glycerate kinase Neighboring gene leucine rich repeat neuronal 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in osteoclast fusion IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-cell leukemia translocation-altered gene protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002585.2NP_001002585.1  T-cell leukemia translocation-altered gene protein homolog

    See identical proteins and their annotated locations for NP_001002585.1

    Status: VALIDATED

    Source sequence(s)
    CT633277, CU856681, EH556465
    UniProtKB/Swiss-Prot
    Q6DGY3
    Related
    ENSDARP00000064887.4, ENSDART00000064888.5
    Conserved Domains (1) summary
    pfam15128
    Location:11100
    T_cell_tran_alt; T-cell leukemia translocation-altered

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    43015916..43019222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)