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ANKRD20A3P ankyrin repeat domain 20 family member A3, pseudogene [ Homo sapiens (human) ]

Gene ID: 441425, updated on 22-Oct-2024

Summary

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Official Symbol
ANKRD20A3Pprovided by HGNC
Official Full Name
ankyrin repeat domain 20 family member A3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31981
See related
Ensembl:ENSG00000290971 AllianceGenome:HGNC:31981
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD20A3
Expression
Biased expression in testis (RPKM 4.5), lung (RPKM 0.8) and 11 other tissues See more
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Genomic context

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See ANKRD20A3P in Genome Data Viewer
Location:
9q21.11
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (66093946..66153187, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 95 member B1-like Neighboring gene cytochrome P450 family 4 subfamily F member 59, pseudogene Neighboring gene sorting nexin 18 pseudogene 4 Neighboring gene RNA, U6 small nuclear 538, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:43133708-43134468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:43134469-43135229 Neighboring gene general transcription factor II, i pseudogene Neighboring gene meprin A subunit alpha pseudogene 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000009.12 Chromosome 9 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
  2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. Khanna R, et al. FEBS J, 2018 Jun. PMID 29676528
  3. Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer. Vichas A, et al. Nat Commun, 2021 Aug 9. PMID 34373451, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • ankyrin repeat domain 20 family, member A3
  • ankyrin repeat domain 20A-related
  • ankyrin repeat domain-containing protein 20A3

Clone Names

  • MGC176486, MGC198508

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    66093946..66153187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746296.3 RNA Sequence

  2. XR_001746295.3 RNA Sequence

  3. XR_007061553.1 RNA Sequence

  4. XR_007061554.1 RNA Sequence

    Related
    ENST00000726254.1

  5. XR_007061555.1 RNA Sequence

    Related
    ENST00000697244.2

  6. XR_007061556.1 RNA Sequence

    Related
    ENST00000726260.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012419.2: Suppressed sequence

    Description
    NM_001012419.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VUR7.1 GenPept UniProtKB/Swiss-Prot:Q5VUR7

Gene LinkOut

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