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tmc2b transmembrane channel-like 2b [ Takifugu rubripes (torafugu) ]

Gene ID: 446001, updated on 5-Mar-2024

Summary

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Gene symbol
tmc2b
Gene description
transmembrane channel-like 2b
See related
Ensembl:ENSTRUG00000001798
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
zebrafish all
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Genomic context

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See tmc2b in Genome Data Viewer
Location:
chromosome: 21
Exon count:
21
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 21 NC_042305.1 (1778724..1786680, complement)
101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072374.1 (139174..146839)

Chromosome 21 - NC_042305.1Genomic Context describing neighboring genes Neighboring gene annexin A1a Neighboring gene uncharacterized LOC105418650 Neighboring gene uncharacterized LOC105418648 Neighboring gene centromere-associated protein E-like Neighboring gene zinc finger, AN1-type domain 5a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins. Keresztes G, et al. BMC Genomics, 2003 Jun 17. PMID 12812529, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mechanosensitive monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus involved in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vestibular reflex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane channel-like protein 2-B; tmc2-related protein 1
Names
Tmc2-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048037.1 → NP_001041502.1  transmembrane channel-like protein 2-B

    See identical proteins and their annotated locations for NP_001041502.1

    Status: PROVISIONAL

    Source sequence(s)
    AY263167
    UniProtKB/TrEMBL
    Q7T1U3
    Related
    ENSTRUT00000004172.3
    Conserved Domains (1) summary
    pfam07810
    Location:630 → 736
    TMC; TMC domain

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042305.1 Reference fTakRub1.2 Primary Assembly

    Range
    1778724..1786680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029828955.1 → XP_029684815.1  tmc2-related protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials