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tmc2a transmembrane channel-like 2a [ Takifugu rubripes (torafugu) ]

Gene ID: 446002, updated on 5-Mar-2024

Summary

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Gene symbol
tmc2a
Gene description
transmembrane channel-like 2a
See related
Ensembl:ENSTRUG00000011665
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
tmc2
Orthologs
zebrafish all
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Genomic context

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See tmc2a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 6 NC_042290.1 (2508578..2517866, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 6 NC_018895.1 (1362458..1371896, complement)

Chromosome 6 - NC_042290.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 5 Neighboring gene annexin A1-like Neighboring gene dynein regulatory complex subunit 7-like Neighboring gene AN1-type zinc finger protein 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins. Keresztes G, et al. BMC Genomics, 2003 Jun 17. PMID 12812529, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mechanosensitive monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus involved in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vestibular reflex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane channel-like protein 2-A
Names
Tmc2-related protein 2
transmembrane channel like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042290.1 Reference fTakRub1.2 Primary Assembly

    Range
    2508578..2517866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029838028.1 → XP_029693888.1  transmembrane channel-like protein 2-A

    UniProtKB/TrEMBL
    H2TXS7
    Related
    ENSTRUP00000029485.3, ENSTRUT00000029602.3
    Conserved Domains (1) summary
    pfam07810
    Location:580 → 695
    TMC; TMC domain
Nucleotide Protein
Heading Accession and Version

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