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rnf113a ring finger protein 113A [ Danio rerio (zebrafish) ]

Gene ID: 446116, updated on 4-Jan-2025

Summary

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Official Symbol
rnf113aprovided by ZNC
Official Full Name
ring finger protein 113Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040825-1
See related
Ensembl:ENSDARG00000037930 AllianceGenome:ZFIN:ZDB-GENE-040825-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
znf183; wu:fj91a07; zgc:110007
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See rnf113a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31919042..31924589, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (31787328..31792875, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 3e Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 42 Neighboring gene STE20 related adaptor alpha Neighboring gene small nuclear ribonucleoprotein 70 (U1) Neighboring gene uncharacterized LOC110439178 Neighboring gene lin-7 homolog B (C. elegans)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of 315 genes essential for early zebrafish development. Amsterdam A, et al. Proc Natl Acad Sci U S A, 2004 Aug 31. PMID 15256591, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in snoRNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF113A
Names
zinc finger protein 183
NP_001004536.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004536.1 → NP_001004536.1  E3 ubiquitin-protein ligase RNF113A

    See identical proteins and their annotated locations for NP_001004536.1

    Status: PROVISIONAL

    Source sequence(s)
    AY648809
    UniProtKB/TrEMBL
    Q4VBU4, Q6DRF0
    Related
    ENSDARP00000110509.1, ENSDART00000122589.3
    Conserved Domains (3) summary
    COG5152
    Location:23 → 309
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    pfam00642
    Location:185 → 211
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam13920
    Location:249 → 289
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    31919042..31924589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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