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bod1.L biorientation of chromosomes in cell division 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446336, updated on 20-Nov-2024

Summary

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Official Symbol
bod1.L
Official Full Name
biorientation of chromosomes in cell division 1 L homeolog
Primary source
Xenbase:XB-GENE-6079024
Locus tag
XELAEV_18001820mg
See related
EnsemblRapid:ENSXLAG00005005212 AllianceGenome:Xenbase:XB-GENE-6079024
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
bod1; fam44b
Summary
Predicted to act upstream of or within cell division and replication fork processing. Predicted to be located in centrosome; cytoplasm; and kinetochore. Predicted to be part of Set1C/COMPASS complex. Orthologous to human BOD1 (biorientation of chromosomes in cell division 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See bod1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (153199064..153212066, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694815.1 (3105702..3118736, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene sodium- and chloride-dependent GABA transporter 3 Neighboring gene protein Wnt-7a Neighboring gene protein tyrosine phosphatase domain-containing protein 1-like Neighboring gene histone deacetylase 11 Neighboring gene serine/threonine-protein kinase WNK2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81222

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
biorientation of chromosomes in cell division protein 1
Names
Protein FAM44B
biorientation defective protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093032.1 → NP_001086501.1  biorientation of chromosomes in cell division protein 1

    See identical proteins and their annotated locations for NP_001086501.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076724
    UniProtKB/Swiss-Prot
    Q6DFL2
    Related
    ENSXLAP00005015404.1, ENSXLAT00005015689.1
    Conserved Domains (1) summary
    pfam05205
    Location:35 → 128
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    153199064..153212066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DFL2.1 GenPept UniProtKB/Swiss-Prot:Q6DFL2

Gene LinkOut

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