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l(3)04053 lethal (3) 04053 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 46158, updated on 4-Jan-2025

Summary

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Official Symbol
l(3)04053provided by FlyBase
Official Full Name
lethal (3) 04053provided by FlyBase
Primary source
FLYBASE:FBgn0010830
Locus tag
Dmel_CG11238
See related
AllianceGenome:FB:FBgn0010830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG11238; Dmel\CG11238; l(3)j8B2
Summary
Is expressed in several structures, including antennal anlage; anterior endoderm; anterior endoderm anlage; central brain anlage; and embryonic/larval midgut primordium. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See l(3)04053 in Genome Data Viewer
Location:
80A1-80A1; 3-47 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (22738602..22741388, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (22731702..22734488, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45163 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45961 Neighboring gene Secretory Pathway Calcium atpase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel subcellular locations and functions for secretory pathway Ca2+/Mn2+-ATPases. Southall TD, et al. Physiol Genomics, 2006 Jun 16. PMID 16609144
  2. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article
  3. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970, Free PMC Article
  4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
  5. The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes. Spradling AC, et al. Genetics, 1999 Sep. PMID 10471706, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
lethal (3) 04053
Names
CG11238-PA
l(3)04053-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    22738602..22741388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141157.4 → NP_649414.1  lethal (3) 04053 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VNR6
    Related
    FBpp0078187
    Conserved Domains (1) summary
    pfam15898
    Location:421 → 487
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VNR6 Q9VNR6

Gene LinkOut

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