PATR-DRA major histocompatibility complex, class II, DR alpha [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: PATR-DRA
Gene description: major histocompatibility complex, class II, DR alpha
Locus tag: CK820_G0006934
See related: Ensembl:ENSPTRG00000018016
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: Patt-Dra
Orthologs: human all
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Genomic context

Location:: chromosome: 5

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	5	NC_072403.2 (38246277..38251770)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	6	NC_072404.1 (38246284..38251777)

Chromosome 5 - NC_072403.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH78783 (e-PCR)
- UniSTS:46610

PMC204479P1 (e-PCR)
- UniSTS:271940

GDB:177843 (e-PCR)
- UniSTS:154975

PMC153210P2 (e-PCR)
- UniSTS:271252

PMC87290P1 (e-PCR)
- UniSTS:273592

PMC166015P1 (e-PCR)
- UniSTS:271558

Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in antigen processing and presentation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of MHC class II protein complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: major histocompatibility complex, class II, DR alpha

Names: MHC class II alpha chain; MHC class II antigen; MHC class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001134339.1 → NP_001127811.1 major histocompatibility complex, class II, DR alpha precursor

See identical proteins and their annotated locations for NP_001127811.1

Status: PROVISIONAL

Source sequence(s)

AM910166

UniProtKB/TrEMBL

A0A2C8CX22, A0A2C8CZG7, A0A2J8NYD0, A0A663DI41, B3KYU1, B3KYU2, H2QSR4

Related

ENSPTRP00000030766.4, ENSPTRT00000033300.4

Conserved Domains (3) summary

cd05767
Location:111 → 204

IgC_MHC_II_alpha; Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

pfam00993
Location:29 → 106

MHC_II_alpha; Class II histocompatibility antigen, alpha domain

pfam16196
Location:201 → 253

C1-set_C; C1-set C-terminal domain