PATR-DRB5 major histocompatibility complex, class II, DR beta 5 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: PATR-DRB5
Gene description: major histocompatibility complex, class II, DR beta 5
Locus tag: CK820_G0006936
See related: Ensembl:ENSPTRG00000023735
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: mhc-DRB
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	5	NC_072403.2 (38327993..38340400, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	6	NC_072404.1 (38328000..38340407, complement)

Chromosome 5 - NC_072403.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

GDB:177509 (e-PCR)
- UniSTS:154904

RH80065 (e-PCR)
- UniSTS:88606

NoName (e-PCR)
- UniSTS:487006

RH76259 (e-PCR)
- UniSTS:83922

RH15772 (e-PCR)
- UniSTS:7126

RH69091 (e-PCR)
- UniSTS:25841

Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in antigen processing and presentation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of MHC class II protein complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: major histocompatibility complex, class II, DR beta 5

Names: MHC class II DR-beta-5*0101; MHC class II DRB antigen; MHC class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001279775.1 → NP_001266704.1 major histocompatibility complex, class II, DR beta 5 precursor

See identical proteins and their annotated locations for NP_001266704.1

Status: PROVISIONAL

Source sequence(s)

FN424221

UniProtKB/TrEMBL

D5G3T4, D5G3T5

Related

ENSPTRP00000056708.3, ENSPTRT00000065144.3

Conserved Domains (2) summary

cd05766
Location:126 → 219

IgC_MHC_II_beta; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

pfam00969
Location:42 → 116

MHC_II_beta; Class II histocompatibility antigen, beta domain

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

38327993..38340400 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)