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PATR-DQB1 major histocompatibility complex, class II, DQ beta 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462594, updated on 10-Oct-2024

Summary

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Gene symbol
PATR-DQB1
Gene description
major histocompatibility complex, class II, DQ beta 1
Locus tag
CK820_G0006939
See related
Ensembl:ENSPTRG00000018001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
mhc-DRB; Patr-DRB1
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Genomic context

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See PATR-DQB1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38476263..38532876, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38476270..38487098, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 3 chain Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DQ alpha 1 Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene uncharacterized LOC107975113

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterisation of four non-human primate Mhc-DQB1 alleles. de Groot NG, et al. Tissue Antigens, 1998 Nov. PMID 9864042
  2. Mhc-DQB repertoire variation in hominoid and Old World primate species. Otting N, et al. J Immunol, 1992 Jul 15. PMID 1624794
  3. The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. de Groot NG, et al. Mol Immunol, 2009 Dec. PMID 19800692, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
major histocompatibility complex, class II, DQ beta 1
Names
DRB1 transplantation antigen
MHC class II DR-beta-1*0201
MHC class II DR-beta-1*0202
MHC class II DR-beta-1*0203
MHC class II DR-beta-1*0204
MHC class II DRB antigen
MHC class II antigen
MHC class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271071.3 → NP_001258000.3  major histocompatibility complex, class II, DQ beta 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAQQLN020000005
    UniProtKB/TrEMBL
    H2RAS7
    Related
    ENSPTRP00000054448.2, ENSPTRT00000061904.2

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38476263..38532876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063811920.1 → XP_063667990.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  2. XM_063811917.1 → XP_063667987.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  3. XM_063811918.1 → XP_063667988.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  4. XM_063811921.1 → XP_063667991.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  5. XM_063811926.1 → XP_063667996.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  6. XM_063811922.1 → XP_063667992.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  7. XM_063811924.1 → XP_063667994.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  8. XM_063811919.1 → XP_063667989.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  9. XM_063811925.1 → XP_063667995.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7

  10. XM_063811923.1 → XP_063667993.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

    UniProtKB/TrEMBL
    H2RAS7
Nucleotide Protein
Heading Accession and Version

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