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PATR-DPA1 major histocompatibility complex, class II, DP alpha 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462598, updated on 10-Oct-2024

Summary

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Gene symbol
PATR-DPA1
Gene description
major histocompatibility complex, class II, DP alpha 1
Locus tag
CK820_G0006963
See related
Ensembl:ENSPTRG00000018029
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
MHC-DPA1
Orthologs
human all
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Genomic context

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See PATR-DPA1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38949301..38957949, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38949308..38957975, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129144363 Neighboring gene bromodomain containing 2 Neighboring gene HLA class II histocompatibility antigen, DO alpha chain Neighboring gene major histocompatibility complex, class II, DP beta 1 Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain-like Neighboring gene uncharacterized LOC129144235 Neighboring gene uncharacterized LOC134810288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DP alpha 1 chain
Names
MHC class II protein
Mhc-Patr-DPA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38949301..38957949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009450999.4 → XP_009449274.3  HLA class II histocompatibility antigen, DP alpha 1 chain isoform X1

    UniProtKB/TrEMBL
    A0A1C4TVB8

  2. XM_009451001.4 → XP_009449276.3  HLA class II histocompatibility antigen, DP alpha 1 chain isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials