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PATR-DPB1 major histocompatibility complex, class II, DP beta 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462599, updated on 29-Mar-2024

Summary

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Gene symbol
PATR-DPB1
Gene description
major histocompatibility complex, class II, DP beta 1
Locus tag
CK820_G0006964
See related
Ensembl:ENSPTRG00000018030
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human all
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Genomic context

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See PATR-DPB1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38957875..38971008)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38960252..38971057)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129144363 Neighboring gene bromodomain containing 2 Neighboring gene HLA class II histocompatibility antigen, DO alpha chain Neighboring gene major histocompatibility complex, class II, DP alpha 1 Neighboring gene HLA class II histocompatibility antigen, DP beta 1 chain-like Neighboring gene uncharacterized LOC129144235 Neighboring gene uncharacterized LOC134810288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence analysis of the MHC class II DPB1 gene in chimpanzees (Pan troglodytes). Bak EJ, et al. Int J Immunogenet, 2005 Jun. PMID 15932624
  2. Rapid allelic diversification and intensified selection at antigen recognition sites of the Mhc class II DPB1 locus during hominoid evolution. Gyllensten U, et al. Tissue Antigens, 1996 Mar. PMID 8740771
  3. Characterization and distribution of Mhc-DPB1 alleles in chimpanzee and rhesus macaque populations. Otting N, et al. Hum Immunol, 1998 Oct. PMID 9757948
  4. Molecular mechanism and cellular function of MHCII ubiquitination. Oh J, et al. Immunol Rev, 2015 Jul. PMID 26085212, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DP beta 1 chain
Names
MHC class II antigen
MHC class II beta chain
MHC class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38957875..38971008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_518391.9 → XP_518391.4  HLA class II histocompatibility antigen, DP beta 1 chain isoform X2

  2. XM_063812371.1 → XP_063668441.1  HLA class II histocompatibility antigen, DP beta 1 chain isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials