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POP3 RNase P and RNase MRP subunit [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4852037, updated on 11-Apr-2024

Summary

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Gene symbol
POP3
Gene description
RNase P and RNase MRP subunit
Locus tag
PICST_53125
Gene type
protein coding
RNA name
RNase P and RNase MRP subunit
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See POP3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_009068.1 (3470101..3470892)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene Peptidyl-prolyl cis-trans isomerase CPR6 (PPIase) (Rotamase) Neighboring gene DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) Neighboring gene DNA replication factor C Neighboring gene suppressor of actin mutation

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribonuclease MRP activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intronic box C/D snoRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, RNase MRP-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RNase P and RNase MRP subunit

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    3470101..3470892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386960.1 → XP_001386997.2  RNase P and RNase MRP subunit, partial [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001386997.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GID8
    Conserved Domains (1) summary
    pfam08228
    Location:26 → 224
    RNase_P_pop3; RNase P subunit Pop3
Nucleotide Protein
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